View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20357_low_9 (Length: 259)
Name: NF20357_low_9
Description: NF20357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20357_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 39854016 - 39854115
Alignment:
| Q |
24 |
atcattgacaccaagacctaactaattaaacttatcctgaatttttaaattatttaatgcgtctttttatcttaagtaagtacacaatccaatctaatcc |
123 |
Q |
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| T |
39854016 |
atcattgacaccaagacctaactaattaaacttatcctgaatttttaaattatttaatgcgtctttttatcttaagtaagtacacaatccaatctaatcc |
39854115 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 39854220 - 39854262
Alignment:
| Q |
207 |
gcttcattcgtttattgtctttggcttttcacatacacctatg |
249 |
Q |
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| T |
39854220 |
gcttcattcgtttcttgtctttggcttttcacatacacctatg |
39854262 |
T |
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