View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20358_low_1 (Length: 425)

Name: NF20358_low_1
Description: NF20358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20358_low_1
NF20358_low_1
[»] chr8 (12 HSPs)
chr8 (184-409)||(2051718-2051943)
chr8 (199-409)||(2055589-2055800)
chr8 (9-133)||(2051544-2051668)
chr8 (296-409)||(2058891-2059004)
chr8 (303-409)||(1948223-1948329)
chr8 (306-409)||(2034625-2034728)
chr8 (303-409)||(2029704-2029810)
chr8 (205-252)||(2058840-2058887)
chr8 (318-409)||(2047958-2048049)
chr8 (330-409)||(10769378-10769457)
chr8 (318-391)||(2038715-2038788)
chr8 (342-375)||(2023297-2023330)
[»] chr4 (1 HSPs)
chr4 (270-409)||(48905003-48905142)
[»] chr2 (3 HSPs)
chr2 (351-395)||(28699543-28699587)
chr2 (343-395)||(28735043-28735095)
chr2 (334-395)||(28742176-28742237)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 184 - 409
Target Start/End: Original strand, 2051718 - 2051943
Alignment:
Q  184 ataatcatgtgtcaccaggatcgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttcgtcaggtttttaagatatta 283  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2051718 ataatcatgtgtcaccaggatcgatcgtgtttgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttggtcaggtttttaagatatta 2051817  T
Q  284 attggaaggatcgataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacataga 383  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2051818 attggaaggatcgataatagatgtaaacatacaactaattatttgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacataga 2051917  T
Q  384 gtacttgcaaatcaagttggcccaag 409  Q
    |||||||||||||||||||| |||||    
T  2051918 gtacttgcaaatcaagttggtccaag 2051943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 199 - 409
Target Start/End: Original strand, 2055589 - 2055800
Alignment:
Q  199 caggatcgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttcgtcaggtttttaagatattaattggaaggatcgat 298  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||| ||| |||||||| |    
T  2055589 caggttcgatcgtgattgaaccaatattaaaccatgaccttaaggtctcattgattcgattcttggtcaggtttttaagatattatttgaaaggatcggt 2055688  T
Q  299 -aatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatca 397  Q
     ||| |||||||||| |||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||      
T  2055689 taatagatgtaaacacataactaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgtacatagagtacttgccaatac 2055788  T
Q  398 agttggcccaag 409  Q
    |||||| |||||    
T  2055789 agttggtccaag 2055800  T

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Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 2051544 - 2051668
Alignment:
Q  9 agcataggcttaaatatagattgaatcgactgtttcaaccaattgaatcaatttaccggctggtttgactcgattacattgagtttgcttttatcaaatt 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2051544 agcattggcttaaatatagattgaatcgactgtttcaaccaattgaatcagtttaccggctggtttgactcgattacattgagtttgcttttatcaaatt 2051643  T
Q  109 gtactaggattgaactgggttcaac 133  Q
    |||||||||||||||||||||||||    
T  2051644 gtactaggattgaactgggttcaac 2051668  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 296 - 409
Target Start/End: Original strand, 2058891 - 2059004
Alignment:
Q  296 gataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaat 395  Q
    |||||| | |||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||    
T  2058891 gataataggtgtaaacatatatctaattatttgattgtttgaattgtagcttataacaaatgacaaattcaagagtgttgtacatagagtaattgccaat 2058990  T
Q  396 caagttggcccaag 409  Q
    |||||||| |||||    
T  2058991 caagttggtccaag 2059004  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 409
Target Start/End: Complemental strand, 1948329 - 1948223
Alignment:
Q  303 gatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttg 402  Q
    |||| ||||||||| |||||||| |  |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1948329 gatgcaaacatatagctaattattttcttgtttgatttgtagcttataacaaatgacaaattcaagagtgttgaacatagagtagttgcaaatcaagttg 1948230  T
Q  403 gcccaag 409  Q
    | |||||    
T  1948229 gtccaag 1948223  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 409
Target Start/End: Original strand, 2034625 - 2034728
Alignment:
Q  306 gtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcc 405  Q
    |||| ||||||||||||||| |||||| || ||||||||||||| |||||||||| |||||||||||||| ||| |||||| |||||||| |||||||||    
T  2034625 gtaagcatataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagtagttgcaaatgaagttggcc 2034724  T
Q  406 caag 409  Q
    ||||    
T  2034725 caag 2034728  T

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Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 409
Target Start/End: Original strand, 2029704 - 2029810
Alignment:
Q  303 gatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttg 402  Q
    ||||||| ||||||||||||||| |||||||||   ||||||||||| |||||||| | |||||||||||||| |||||||||| |||||||||||||||    
T  2029704 gatgtaagcatataactaattatttgtttgtttaccttgtagcttataacaaatgatagattcaagagtgttgaacatagagtagttgcaaatcaagttg 2029803  T
Q  403 gcccaag 409  Q
    | |||||    
T  2029804 gtccaag 2029810  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 2058840 - 2058887
Alignment:
Q  205 cgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattga 252  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  2058840 cgatcgtgattgaaccaatattaaaccatgacctaaaggtctcattga 2058887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 2047958 - 2048049
Alignment:
Q  318 ctaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaag 409  Q
    |||||||| |||||||||   ||||||||||| |||||||||| |||||||||| ||| ||| | ||||||||||||| || |||| |||||    
T  2047958 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagttttgaacacaaagtacttgcaaataaaattggtccaag 2048049  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 10769378 - 10769457
Alignment:
Q  330 ttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaag 409  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |  || ||||| ||||||||| | ||||| |||||    
T  10769378 ttgtttgaagtgtagcttataacaaatgacaaattcaagagtgtggagcacagagttcttgcaaataatgttggtccaag 10769457  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 391
Target Start/End: Original strand, 2038715 - 2038788
Alignment:
Q  318 ctaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgc 391  Q
    ||||||||  ||||||||   ||||||||||| |||||||||| |||||||||||||| ||| |||||||||||    
T  2038715 ctaattattagtttgtttaccttgtagcttataacaaatgacagattcaagagtgttgaacacagagtacttgc 2038788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 2023297 - 2023330
Alignment:
Q  342 tagcttattacaaatgacaaattcaagagtgttg 375  Q
    ||||||||||||||||||||||||||||||||||    
T  2023297 tagcttattacaaatgacaaattcaagagtgttg 2023330  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 409
Target Start/End: Complemental strand, 48905142 - 48905003
Alignment:
Q  270 tttttaagatattaattggaaggatcgataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaaga 369  Q
    ||||||||||||| ||| ||||| || |||||  |||||| |||||   ||||||| |||  || ||||| | ||||||| ||||||||||| || ||||    
T  48905142 tttttaagatattgatttgaagggtcaataatatatgtaagcatatcggtaattatttgtacgtatgaatcgcagcttataacaaatgacaagtttaaga 48905043  T
Q  370 gtgttgtacatagagtacttgcaaatcaagttggcccaag 409  Q
    |||||| ||| |||||| |||||||||||||||| |||||    
T  48905042 gtgttgaacacagagtagttgcaaatcaagttggtccaag 48905003  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 28699587 - 28699543
Alignment:
Q  351 acaaatgacaaattcaagagtgttgtacatagagtacttgcaaat 395  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  28699587 acaaatgacaaattcaagagtgttgaacatagagtactggcaaat 28699543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 28735095 - 28735043
Alignment:
Q  343 agcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaat 395  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||| ||||||    
T  28735095 agcttataacaaatgataaattcaagagtgttgaacatagagtactggcaaat 28735043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 28742237 - 28742176
Alignment:
Q  334 ttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaat 395  Q
    ||||| || ||||||| |||||||||| ||||||||||||||  || |||||||| ||||||    
T  28742237 ttgaactgcagcttataacaaatgacagattcaagagtgttgagcacagagtactagcaaat 28742176  T

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