View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20358_low_4 (Length: 216)
Name: NF20358_low_4
Description: NF20358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20358_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33858342 - 33858543
Alignment:
| Q |
1 |
aagtctccaacaaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33858342 |
aagtctccaacaaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatag |
33858441 |
T |
|
| Q |
101 |
attccgtagcggtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggttaataataccttattatatctatatttatttctctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
33858442 |
attccgtagcggtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggctaataataccttagtatatctatatttatttctctg |
33858541 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
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|
| T |
33858542 |
tg |
33858543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 33922581 - 33922380
Alignment:
| Q |
1 |
aagtctccaacaaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922581 |
aagtctccaacaaaatttcacaagtcttaatcaaaacattaatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagatag |
33922482 |
T |
|
| Q |
101 |
attccgtagcggtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggttaataataccttattatatctatatttatttctctg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
33922481 |
attccgtagcggtttcttgccgctatagcgctattgattactatgtttcgatggttttccaggctaataataccttagtatatctatatttatttctctg |
33922382 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
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|
| T |
33922381 |
tg |
33922380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33185195 - 33185295
Alignment:
| Q |
1 |
aagtctccaacaaaatttcacaagtcttaatcaaaacatt-aatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaacataggaagata |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||| | ||||||||| |
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| T |
33185195 |
aagtctccaacaaaatttcacaagtcttaatcaaaacattaaatccaaaagaccaaagaacagaggaact-ataaggagaacaaagaatagaggaagata |
33185293 |
T |
|
| Q |
100 |
ga |
101 |
Q |
| |
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|| |
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|
| T |
33185294 |
ga |
33185295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31311269 - 31311308
Alignment:
| Q |
1 |
aagtctccaacaaaatttcacaagtcttaatcaaaacatt |
40 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
31311269 |
aagtctccaacaaaaatccacaagtcttaatcaaaacatt |
31311308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30213156 - 30213242
Alignment:
| Q |
1 |
aagtctccaacaaaatttcacaagtcttaatcaaaacatt-aatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaa |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||| ||||||||||| ||||||| ||||||||| |
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| T |
30213156 |
aagtctccaacaaaatttcacaagtcttagttaaaacattaaatccaaaagaacaaaggacagaggaact-aaaaagaaaacaaagaa |
30213242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 43854034 - 43853990
Alignment:
| Q |
57 |
gaacagaggaactaaaaaagagaacaaagaacataggaagatagat |
102 |
Q |
| |
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|||| ||||||||||||| |||||||||||||| |||||||||||| |
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| T |
43854034 |
gaaccgaggaactaaaaa-gagaacaaagaacagaggaagatagat |
43853990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 43631698 - 43631778
Alignment:
| Q |
21 |
caagtcttaatcaaaacatt-aatccaaaagaccaaagaacagaggaactaaaaaagagaacaaagaac-ataggaagatag |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||| | ||| | |||||||||||||||||| | |||||||||| |
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| T |
43631698 |
caagtctcaatcaaaacattaaatccaaaagaaaaaagaacatatgaaat-aaaaagagaacaaagaactagaggaagatag |
43631778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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