View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20359_low_1 (Length: 328)
Name: NF20359_low_1
Description: NF20359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20359_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 11059667 - 11059361
Alignment:
| Q |
9 |
attaataaccttcatcgcctctcgactttcagtaatccgctcagacaacttcttgtaatccttctcagcttcatccatcgcttgctggcatccttgactc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11059667 |
attaataaccttcatcgcctctcgactttcagtaatccgctcagacaacttcttgtaatccttctcagcttcatccatcgcttgctggcatccttgactc |
11059568 |
T |
|
| Q |
109 |
tgcatctataaacttcttaaattagcaagatcacagttaaaaatcaacaattaatcttcattaagatctgtctccattaaaacaaatttcataacatttg |
208 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11059567 |
tgcatctataaactttttaaattagcaacatcacagttaaaaatcaacaattaatcttcattaagatctatctcgattaaaacaaatttcataacatttg |
11059468 |
T |
|
| Q |
209 |
atctattaactaaatcaaaatttatcaactacgctaatctacttatctaattttctacttgcattctctcctttttctagtaaactagatctgattctac |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11059467 |
atctattaactaaatcaaaattcatcaactacgcgaatctacttatctaattttctacttgcattctctccattttctagtaaactagatctgattctac |
11059368 |
T |
|
| Q |
309 |
tacagaa |
315 |
Q |
| |
|
||||||| |
|
|
| T |
11059367 |
tacagaa |
11059361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University