View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2035_high_12 (Length: 272)
Name: NF2035_high_12
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 962133 - 961908
Alignment:
| Q |
40 |
gaatgtactatatttgaaatttgaaatgtaaggatataaatgcttctaattccaggtgcatgcaaattgagagtaaagttaatgcatgcatgcacg---- |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
962133 |
gaatgtactatatttgaaatttgaaatgtaaggata--aatccttctaattccaggtacatgcaaattgagagtaaagttaatgcatgcatgcatgcaca |
962036 |
T |
|
| Q |
136 |
tagataattcagaatttgataataatataatataagtatattttagaagactggtttaataatacttctttcatttcatattaatagttaaattacattt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
962035 |
tagataattcagaatttgataataatataatataagtatattttagaagactggtttaataatacttctttcgtttcatattaatagttaaattacattt |
961936 |
T |
|
| Q |
236 |
ttgttcctttaagtatgttttctttcat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
961935 |
ttgttcctttaagtatgttttctttcat |
961908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University