View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2035_high_14 (Length: 233)

Name: NF2035_high_14
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2035_high_14
NF2035_high_14
[»] chr8 (5 HSPs)
chr8 (15-233)||(34866623-34866841)
chr8 (15-201)||(34389579-34389765)
chr8 (10-153)||(10551685-10551828)
chr8 (24-134)||(9519017-9519127)
chr8 (47-152)||(37987529-37987634)
[»] chr1 (6 HSPs)
chr1 (15-196)||(41919796-41919977)
chr1 (15-184)||(24685075-24685243)
chr1 (26-129)||(17032835-17032939)
chr1 (10-171)||(4651145-4651304)
chr1 (10-99)||(31586262-31586351)
chr1 (32-84)||(24450450-24450501)
[»] chr7 (6 HSPs)
chr7 (15-196)||(38305574-38305755)
chr7 (21-155)||(3420231-3420365)
chr7 (26-130)||(47326447-47326551)
chr7 (30-171)||(38484915-38485055)
chr7 (30-129)||(37792712-37792811)
chr7 (30-86)||(12480298-12480355)
[»] chr4 (8 HSPs)
chr4 (15-196)||(30963777-30963958)
chr4 (15-128)||(16501154-16501267)
chr4 (24-131)||(31051226-31051333)
chr4 (52-171)||(35799957-35800076)
chr4 (32-86)||(46699512-46699566)
chr4 (35-73)||(4305075-4305113)
chr4 (47-100)||(38929125-38929178)
chr4 (35-71)||(7702937-7702973)
[»] chr3 (4 HSPs)
chr3 (12-184)||(19175830-19176001)
chr3 (10-131)||(1653477-1653598)
chr3 (26-171)||(20611145-20611289)
chr3 (8-107)||(17501792-17501891)
[»] chr6 (3 HSPs)
chr6 (15-206)||(16510854-16511045)
chr6 (30-111)||(12793536-12793617)
chr6 (30-58)||(9223377-9223405)
[»] chr2 (6 HSPs)
chr2 (26-194)||(39339408-39339574)
chr2 (20-109)||(31902955-31903044)
chr2 (45-105)||(2062247-2062307)
chr2 (30-99)||(22886068-22886137)
chr2 (24-131)||(27739128-27739235)
chr2 (30-95)||(29486398-29486463)
[»] chr5 (2 HSPs)
chr5 (32-131)||(27712379-27712478)
chr5 (47-152)||(697664-697769)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 34866623 - 34866841
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |    
T  34866623 cacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacccaggtcataaaaaggcggtc 34866722  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacctactcaca 214  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34866723 gcctgtgacaaggagaatgttttcgtcgccgtagtaaaagagaatcaatggtggagcaaaaatggcggatttgaacaacactacccgcaacctactcaca 34866822  T
Q  215 tcaccaccaccacacaacc 233  Q
    |||||||||||||||||||    
T  34866823 tcaccaccaccacacaacc 34866841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 34389579 - 34389765
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| |||||||||||||||| |||||||| | ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| | || |||||     
T  34389579 cacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggct 34389678  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccg 201  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| ||||    
T  34389679 gcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaaccaatggtggagcaaaaacggcagatctgaataacacttcccg 34389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 10551828 - 10551685
Alignment:
Q  10 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 109  Q
    |||| |||| ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  10551828 agcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaagg 10551729  T
Q  110 cggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaa 153  Q
    | | || | |||||||||||||  | || ||||||| |||||||    
T  10551728 ctgtcgtcggtgacaaggagaagacatttgtcaccggagtaaaa 10551685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 9519127 - 9519017
Alignment:
Q  24 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 123  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||||||| | ||||||||| ||  ||| || |  ||| ||| ||||    
T  9519127 aaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaatgttgccacctttgac 9519028  T
Q  124 aaggagaatgc 134  Q
    |||||||||||    
T  9519027 aaggagaatgc 9519017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 37987529 - 37987634
Alignment:
Q  47 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 146  Q
    ||||||| |||||||| |||||||||| | |||||||||| | ||||| ||||| |||| | ||  ||||| ||||||||||||| |||| || |||||     
T  37987529 aacaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccga 37987628  T
Q  147 agtaaa 152  Q
    ||||||    
T  37987629 agtaaa 37987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 41919977 - 41919796
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||| | |||||| | |||||||||||||||||||||||||||| ||| ||||||     
T  41919977 cacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatcattaaatggcggca 41919878  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 196  Q
    |||||||||||||||||||  |||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  41919877 gcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctgaacaacact 41919796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 24685075 - 24685243
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| ||||||||||| ||  |||| |||| ||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||||  ||||    
T  24685075 cacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaaccacaacccatatcataaaaagctggcc 24685174  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 184  Q
    |||||||||||||||||||  |||||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  24685175 gcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaatggcggat 24685243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 17032939 - 17032835
Alignment:
Q  26 atctagaggaagacgaaatccaacaac-aaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgaca 124  Q
    ||||||||||||||||||||||||||| ||||||| || || ||| ||| | |||||| ||| |||||||| ||||| ||||| | ||||||| ||||||    
T  17032939 atctagaggaagacgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgaca 17032840  T
Q  125 aggag 129  Q
    |||||    
T  17032839 aggag 17032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 4651304 - 4651145
Alignment:
Q  10 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 109  Q
    |||| |||| ||||| |||  ||||||||||||| | |||||||||||||  | |||||| ||| ||||||||||||  ||||| | |||  ||||||||    
T  4651304 agcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaa--acaactccgattgtaaaaagg 4651207  T
Q  110 cggccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 171  Q
    | |||| | |||| ||||||||  | |  ||| ||| |||||||||||||||||||||||||    
T  4651206 cagccgtcagtgataaggagaagacatctgtcgccggagtaaaagagaatcaatggtggagc 4651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 31586262 - 31586351
Alignment:
Q  10 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 99  Q
    |||| ||| |||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||| | |||||||| | ||| ||||||||    
T  31586262 agcaacactgacacaaatccagagaaagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 24450450 - 24450501
Alignment:
Q  32 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcgg 84  Q
    ||||||| |||| |||||||||||||||||| |||||||| | ||||||||||    
T  24450450 aggaagatgaaacccaacaacaaaacacgggcagcgacgcag-tttgaagcgg 24450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 38305755 - 38305574
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||| |||||  ||||||||||    
T  38305755 cacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacccatatcatttaaaggcggcc 38305656  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 196  Q
    | ||||||||| |||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  38305655 gactgtgacaacgagaatgcgttcgtcgccgtagtaaaagagagccaatggtggagcaaaaacggcggatatgaacagcact 38305574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 3420231 - 3420365
Alignment:
Q  21 cataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgt 120  Q
    ||||||| ||||||||||||||| | |||||||||||||| | |||||||||| || ||||||||||||||||| ||||||||||||||||| | |||||    
T  3420231 cataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaaggcggtctcctgt 3420330  T
Q  121 gacaaggagaatgctttcgtcaccgtagtaaaaga 155  Q
     ||| ||||||||| |||||| |||||||||||||    
T  3420331 aacagggagaatgcgttcgtcgccgtagtaaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 47326447 - 47326551
Alignment:
Q  26 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 125  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| | || ||||||| | |||||| ||||||||||||| |||||||    
T  47326447 atctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaa 47326546  T
Q  126 ggaga 130  Q
    |||||    
T  47326547 ggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 38485055 - 38484915
Alignment:
Q  30 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 129  Q
    |||||||||||||| |  ||||||||||| ||| |||||||||| |||||||||||| ||||||||  ||| |||||||| ||||| | |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc-catcgtaaaaaggtggccgtcagtgacaaggag 38484957  T
Q  130 aatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 171  Q
    ||  | |  ||| ||| ||||||| |||| ||||||||||||    
T  38484956 aagacatctgtcgccggagtaaaatagaaacaatggtggagc 38484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 37792811 - 37792712
Alignment:
Q  30 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 129  Q
    |||| |||| |||| |||||| ||||||||||  | |||||||| |||||||||||| ||||||||| ||| |||||||||   |||| |||||||||||    
T  37792811 agagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacccatatcgtaaaaaggcaatcgccggtgacaaggag 37792712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 12480355 - 12480298
Alignment:
Q  30 agaggaagac-gaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 86  Q
    |||||||||| |||| |||||||||||||||| | |||||||||| ||||||| ||||    
T  12480355 agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 30963958 - 30963777
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||  || |    
T  30963958 cacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacccagatcataaaaagatggtc 30963859  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacact 196  Q
    |||||||||||||||||||| ||||||   |||||||||||||| ||||||||||| ||||||||||||| |||||| ||||    
T  30963858 gcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctgaacagcact 30963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 16501267 - 16501154
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| ||| |||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||| ||| || |||| |||||    
T  16501267 cacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatcgtataaagacggcc 16501168  T
Q  115 gcctgtgacaagga 128  Q
    ||| ||||||||||    
T  16501167 gccggtgacaagga 16501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 31051226 - 31051333
Alignment:
Q  24 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 123  Q
    ||||||| ||||||| | || |||||||||||||||||| |||||||||| | |||||||||  ||||||||| ||| ||||||||||||| ||  | ||    
T  31051226 aaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaaggcggccaccgataac 31051325  T
Q  124 aaggagaa 131  Q
    ||||||||    
T  31051326 aaggagaa 31051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 35800076 - 35799957
Alignment:
Q  52 caaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgtagtaa 151  Q
    ||||||||||| | ||||||||||||||| ||||| || |||||| | | ||||||||||| || | || |||||||||| || | |||||||| ||||     
T  35800076 caaaacacgggcaacgacgccgatttgaaacggaaacataacccataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtac 35799977  T
Q  152 aagagaatcaatggtggagc 171  Q
    ||||||| ||||||||||||    
T  35799976 aagagaaccaatggtggagc 35799957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 46699512 - 46699566
Alignment:
Q  32 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 86  Q
    ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  46699512 aggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 4305113 - 4305075
Alignment:
Q  35 aagacgaaatccaacaacaaaacacgggaagcgacgccg 73  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  4305113 aagacgaaatccaacaacaaaacacgggcagcgacgccg 4305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 38929178 - 38929125
Alignment:
Q  47 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatc 100  Q
    |||||||||||||||| || ||||||| | |||||||||| ||||||| |||||    
T  38929178 aacaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctagatc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 7702973 - 7702937
Alignment:
Q  35 aagacgaaatccaacaacaaaacacgggaagcgacgc 71  Q
    ||||||||||||||||||||||||| || ||||||||    
T  7702973 aagacgaaatccaacaacaaaacacaggcagcgacgc 7702937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 19176001 - 19175830
Alignment:
Q  12 cagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcg 111  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||| |||||||||||||     
T  19176001 cagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaaccacaacccatatcataaaaaggca 19175902  T
Q  112 gccgcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 184  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19175901 gccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaacggcggat 19175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 1653477 - 1653598
Alignment:
Q  10 agcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 109  Q
    |||| |||| |||||||| | |||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||  |||||||||||| ||| ||||    
T  1653477 agcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaagg 1653576  T
Q  110 cggccgcctgtgacaaggagaa 131  Q
      |||||| |||||||||||||    
T  1653577 ttgccgccagtgacaaggagaa 1653598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 20611289 - 20611145
Alignment:
Q  26 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 125  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||||||| | |||||| |||||||||||||  ||||||    
T  20611289 atctagatgaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggccgccgatgacaa 20611190  T
Q  126 ggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagc 171  Q
    |||| | || ||||||  || |||||||||||| ||||||||||||    
T  20611189 ggag-aggcgttcgtcggcggagtaaaagagaaccaatggtggagc 20611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 17501792 - 17501891
Alignment:
Q  8 gaagcagcacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaa 107  Q
    |||||| |||| | ||| |||||||||||||||||||| |||||||||||||||  |  |||| |  |||||||||||| ||||||| ||||| ||||||    
T  17501792 gaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaacctagatcgtaaaaa 17501891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 16510854 - 16511045
Alignment:
Q  15 cacagacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggcc 114  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||| ||||||||||||| ||||||||||||| | |    
T  16510854 cacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaaggcagtc 16510953  T
Q  115 gcctgtgacaaggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaacactacccgcaacc 206  Q
    || ||||||||||||||||  ||| || |||||||||||||||| ||||||||||||||||||||||| | |||||| |||| |||| ||||    
T  16510954 gcttgtgacaaggagaatgtgttcatctccgtagtaaaagagaaacaatggtggagcaaaaacggcggttctgaacagcacttcccggaacc 16511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 12793617 - 12793536
Alignment:
Q  30 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcg 111  Q
    |||||||||||||||||| || ||||||||||| | |||||||  ||||||||| || ||||||||| ||| ||||||||||    
T  12793617 agaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacacaacccatatcgtaaaaaggcg 12793536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 9223405 - 9223377
Alignment:
Q  30 agaggaagacgaaatccaacaacaaaaca 58  Q
    |||||||||||||||||||||||||||||    
T  9223405 agaggaagacgaaatccaacaacaaaaca 9223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 39339408 - 39339574
Alignment:
Q  26 atctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaa 125  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||||||| | |||||| ||||||||||||| |||||||    
T  39339408 atctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaa 39339507  T
Q  126 ggagaatgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaacaaca 194  Q
    |||| | || ||||||  || |||||||||||| ||||||||||||   |||||||||| |||||||||    
T  39339508 ggag-aggcgttcgtcggcggagtaaaagagaaccaatggtggagc-gtaacggcggatctgaacaaca 39339574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 31902955 - 31903044
Alignment:
Q  20 acataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 109  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||    
T  31902955 acatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 2062307 - 2062247
Alignment:
Q  45 ccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaa 105  Q
    |||||||||||||||||| |||||||||| | |||||||||| ||||||||||||| ||||    
T  2062307 ccaacaacaaaacacgggcagcgacgccggtctgaagcggaaacacaacccagatcgtaaa 2062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 22886068 - 22886137
Alignment:
Q  30 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 99  Q
    ||||||||| |||| |||||||||||||||||  |||||||||  | |||||||||| || |||||||||    
T  22886068 agaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaagcggaaacaaaacccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 27739235 - 27739128
Alignment:
Q  24 aaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgac 123  Q
    ||||| ||||||||| |||| | ||||||||||||| || ||||||| ||   |||||||||| |||||| ||||||  ||||||| |||| |  |||||    
T  27739235 aaatcaagaggaagatgaaaccaaacaacaaaacacaggcagcgacgtcgccctgaagcggaaacacaacgcagatcgaaaaaaggtggccactagtgac 27739136  T
Q  124 aaggagaa 131  Q
    ||| ||||    
T  27739135 aagaagaa 27739128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 29486463 - 29486398
Alignment:
Q  30 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 95  Q
    ||||| |||||||| | |||||||||||  ||| |||||||||| | |||||||||| ||||||||    
T  29486463 agagggagacgaaaccaaacaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 27712478 - 27712379
Alignment:
Q  32 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaa 131  Q
    ||||||| |||| |||||||||||||||||| | |||||||| | |||||  ||| ||||| | ||||| |||| ||||  || || |||||||||||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggagaa 27712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 697769 - 697664
Alignment:
Q  47 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagaatgctttcgtcaccgt 146  Q
    |||||||  ||||||| |||||||||| | |||||||||| | ||||| ||||| |||| ||||    ||| ||||||||||||| |||| || |||||     
T  697769 aacaacagcacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacaggcacatgccagtgacaaggagaaggcttccggcaccga 697670  T
Q  147 agtaaa 152  Q
    ||||||    
T  697669 agtaaa 697664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University