View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_high_4 (Length: 395)
Name: NF2035_high_4
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 47304453 - 47304080
Alignment:
| Q |
16 |
ttatgaactatgttaccaccagcactagcaccaccaatgaaaactctgttgaaatcaccatggttaattaaccacggttccgggttaactgggtttttcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304453 |
ttatgaactatgttaccaccagcactagcaccaccaatgaaaactctgttgaaatcaccatggttaattaaccacggttccgggttaactgggtttttcg |
47304354 |
T |
|
| Q |
116 |
cagaattagaagcaacccattggagtgaattccaacagtcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304353 |
cagaattagaagcaacccattggagtgaattccaacagtcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
47304254 |
T |
|
| Q |
216 |
tgaatttgctagtggaacgaagatgttgaagtgttcgtggtgcacgttggagaaagcggattcgaagaagaaaccaccgccatggaagaagactaagatg |
315 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47304253 |
tgaatttgctagtggaatgaagatgttgaagtgttcgtggtgcactttggagaaagcggactcgaagaagaaaccaccgccatggaagaagactaagatg |
47304154 |
T |
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| Q |
316 |
gggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgtc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304153 |
gggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgtc |
47304080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 47301555 - 47301182
Alignment:
| Q |
16 |
ttatgaactatgttaccaccagcactagcaccaccaatgaaaactctgttgaaatcaccatggttaattaaccacggttccgggttaactgggtttttcg |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||| | |
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| T |
47301555 |
ttatgaactatgttaccaccagcactatcaccaccaatgaaaactctgttgaaatcaccgtggttaattaaccatgattccgggttaacggggtttgggg |
47301456 |
T |
|
| Q |
116 |
cagaattagaagcaacccattggagtgaattccaacagtcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
215 |
Q |
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||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47301455 |
cagaattggaagcaacccattggagtgagttccaacaatcattataacaagcaggtagagggtgttctggagcaagtctgtattcaacagaaacaactat |
47301356 |
T |
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| Q |
216 |
tgaatttgctagtggaacgaagatgttgaagtgttcgtggtgcacgttggagaaagcggattcgaagaagaaaccaccgccatggaagaagactaagatg |
315 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
47301355 |
tgaatttgcttgcggaacgaagacgttgaagtgttcgtggtagagtttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
47301256 |
T |
|
| Q |
316 |
gggagttttgtggtggggtttttggggaggtagatacgagcggagatattggggttttgagagatgatgatgtc |
389 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
47301255 |
ggaagttttgtagtggggtttttggggaggtagatacgagcagagatgttggggttttgagagatgatgatgtc |
47301182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 47332962 - 47332915
Alignment:
| Q |
165 |
agcaggtagagggtgttctggagcgagtctgtattcaacagaaacaac |
212 |
Q |
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|||||| |||||||||||||| || ||||| ||||||||||||||||| |
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| T |
47332962 |
agcaggaagagggtgttctggtgcaagtctatattcaacagaaacaac |
47332915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 17841692 - 17841392
Alignment:
| Q |
16 |
ttatgaactatgttaccaccagcactagcaccaccaatgaaaactctgttgaaatcaccatggttaattaaccacggttccgggttaactgggtttttcg |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||| | |
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| T |
17841692 |
ttatgaactatgttaccaccagaactaggaccaccaatgaaaactctgttgaaatcaccatggttaattaaccacggttcagcattgaccgggttttttg |
17841593 |
T |
|
| Q |
116 |
cagaattagaagcaacccattggagtgaattccaacagtcattataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaactat |
215 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17841592 |
cagaattggaagcaacccattgaagtgaattccaacagtcatcataacaagcaggtagagggtgttctggagcgagtctgtattcaacagaaacaacaat |
17841493 |
T |
|
| Q |
216 |
tgaatttgctagtggaacgaagatgttgaagtgttcgtggtgcacgttggagaaagcggattcgaagaagaaaccaccgccatggaagaagactaagatg |
315 |
Q |
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||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
17841492 |
ggaattcgctagtggaacgaagacattgcagtgttcgtggtggattttggagaaagcggattcaaagaagaaaccaccgccatggaagaagaccaagatg |
17841393 |
T |
|
| Q |
316 |
g |
316 |
Q |
| |
|
| |
|
|
| T |
17841392 |
g |
17841392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 17841359 - 17841313
Alignment:
| Q |
340 |
gggaggtagatacgagcggagatattggggttttgagagatgatgat |
386 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17841359 |
gggagatagatacgagcggagatgttggggttttgagagatgatgat |
17841313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 673216 - 673167
Alignment:
| Q |
28 |
ttaccaccagcactagcaccaccaatgaaaactctgttgaaatcaccatg |
77 |
Q |
| |
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||||||||| |||| ||||||||||||||||||| ||||||| |||||| |
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| T |
673216 |
ttaccaccactactatcaccaccaatgaaaactctattgaaattaccatg |
673167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 12493093 - 12493146
Alignment:
| Q |
172 |
agagggtgttctggagcgagtctgtattcaacagaaacaactattgaatttgct |
225 |
Q |
| |
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|||||||||||| ||| |||| ||||||||||| |||||||||| |||||||| |
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| T |
12493093 |
agagggtgttctagagagagtatgtattcaacataaacaactatgtaatttgct |
12493146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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