View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2035_high_6 (Length: 350)
Name: NF2035_high_6
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_high_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 39549416 - 39549745
Alignment:
| Q |
1 |
cttaattaagttgtttatccaaacgaagacccaattcacaagtacgtttatgacttgcaaaaagtaaaaacattttactcttaccttccaatatatggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39549416 |
cttaattaagttgtttatccaaacgaagacccaattcacaagtacgtttatgacttgcaaaaagtaaaaacattttactcttaccttccaatatatggat |
39549515 |
T |
|
| Q |
101 |
cgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgcaggaagagcatatgcccatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39549516 |
cgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgcaggaagagcatatgcccatgg |
39549615 |
T |
|
| Q |
201 |
agggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttctgccattccattgaacatgatcacaacaacacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
39549616 |
agggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttccgccattccattgaacatgatcacaacaacgcca |
39549715 |
T |
|
| Q |
301 |
tagaacaatgcacctacatatatgcctcca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39549716 |
tagaacaatgcacctacatatatgcctcca |
39549745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 77 - 333
Target Start/End: Original strand, 39539977 - 39540233
Alignment:
| Q |
77 |
actcttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatcca |
176 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
39539977 |
actcttaccttccaatatatggatcaaaaccaatgacatagtaagtgaggaatacccaaacagccacttccacaaaagacaaggggatttttaggatcca |
39540076 |
T |
|
| Q |
177 |
tgcaggaagagcatatgcccatggagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttctgccattcca |
276 |
Q |
| |
|
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39540077 |
ttcaggaagagcatatgcccatggagggaagaagaggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttcagccattcca |
39540176 |
T |
|
| Q |
277 |
ttgaacatgatcacaacaacaccatagaacaatgcacctacatatatgcctccatga |
333 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
39540177 |
ttgaacatgatcgtaacaacaccatagaatattgcacctacatatatgcctccatga |
39540233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 65 - 333
Target Start/End: Original strand, 39566409 - 39566677
Alignment:
| Q |
65 |
taaaaacattttactcttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggat |
164 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||| | || || || |
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|
| T |
39566409 |
taaaaacatatcactcttacctttcaatatatggatcaaaaccaatgacatagtaggtaaggaacacccaaacagccacttccgcaaaaatcaaaggaat |
39566508 |
T |
|
| Q |
165 |
ttttaggatccatgcaggaagagcatatgcccatggagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatt |
264 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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|
| T |
39566509 |
ttttaggatccatccaggaagagcatatgcccatgcagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccattgaaagt |
39566608 |
T |
|
| Q |
265 |
tctgccattccattgaacatgatcacaacaacaccatagaacaatgcacctacatatatgcctccatga |
333 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
39566609 |
tcagccattccattgaacatgatcacaacaacgccatagaacaatgcacctacatatatacctccatga |
39566677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 80 - 332
Target Start/End: Complemental strand, 39336146 - 39335894
Alignment:
| Q |
80 |
cttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgc |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
39336146 |
cttaccttccaatatatggatcaaaaccaatgacatagtaagtgagaaatacccaaacagccacttccacacaagtcaaggggatttttaggatccatga |
39336047 |
T |
|
| Q |
180 |
aggaagagcatatgcccatggagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttctgccattccattg |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
39336046 |
aggaagagaatatgcccatggagggaaaaaaaggcaccccctttgcttgtagaaaacaggaagccttgaaactaccatggaaagttcagccattccaata |
39335947 |
T |
|
| Q |
280 |
aacatgatcacaacaacaccatagaacaatgcacctacatatatgcctccatg |
332 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
39335946 |
aacatgatcacagtaacgccaaagaacaatgcacctacatatatacctccatg |
39335894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 80 - 332
Target Start/End: Complemental strand, 39347411 - 39347159
Alignment:
| Q |
80 |
cttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgc |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| ||||||| | |||| |||||||||||||||||||| | |
|
|
| T |
39347411 |
cttaccttccaatatatggatcaaaaccaatgacatagtaagtgagaaatacccaaacagccacttccaaacaagtcaaggggatttttaggatccacga |
39347312 |
T |
|
| Q |
180 |
aggaagagcatatgcccatggagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttctgccattccattg |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
39347311 |
aggaagagaatatgcccatggagggaaaaaaaggcaccccctttgcttgtagaaaataggaagccttgaaactaccatggaaagttcagccattccaata |
39347212 |
T |
|
| Q |
280 |
aacatgatcacaacaacaccatagaacaatgcacctacatatatgcctccatg |
332 |
Q |
| |
|
|||||||||||||| || ||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
39347211 |
aacatgatcacaacgacgccaaagaacaacgcacctacatatatacctccatg |
39347159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 77 - 333
Target Start/End: Complemental strand, 39361981 - 39361725
Alignment:
| Q |
77 |
actcttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatcca |
176 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| || ||||| |||| |||||||||||| ||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
39361981 |
actcataccttccaatatatggatcaaaaccaatgacgtaataggtgaggattacccaaacagccacttcaacaaaagtcaagggaattttaaggatcca |
39361882 |
T |
|
| Q |
177 |
tgcaggaagagcatatgcccatggagggaaaaataggtatcccctttgcttgtagaaaacaggaagtcttgaaactaccatggaaatttctgccattcca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |||| |
|
|
| T |
39361881 |
agcaggaagagcatatgcccatggagggaaaaagaggtatcccctttgcttgtagaaaacaggaagccttgaaactaccatggaaagttcagccactcca |
39361782 |
T |
|
| Q |
277 |
ttgaacatgatcacaacaacaccatagaacaatgcacctacatatatgcctccatga |
333 |
Q |
| |
|
| |||| ||| |||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
39361781 |
ataaacaggattacaatacagccatagaacaatgcacctacatatatatctccatga |
39361725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 242
Target Start/End: Original strand, 39590664 - 39590802
Alignment:
| Q |
104 |
aaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgcaggaagagcatatgcccatggagg |
203 |
Q |
| |
|
||||||||| || ||||| ||||||| ||| ||||| ||||||| || ||| ||||||||||||| ||||||| ||| |||||||||||||| | ||| |
|
|
| T |
39590664 |
aaccaatgaagtaataggtgaggaatatccatacagccacttccaaaatagtcaaggggatttttataatccatgaagggagagcatatgcccaagaagg |
39590763 |
T |
|
| Q |
204 |
gaaaaataggtatcccctttgcttgtagaaaacaggaag |
242 |
Q |
| |
|
||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
39590764 |
gaagaaaagatatcctctttgcttgtagaatacaggaag |
39590802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 242
Target Start/End: Original strand, 39623433 - 39623546
Alignment:
| Q |
129 |
tacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgcaggaagagcatatgcccatggagggaaaaataggtatcccctttgcttg |
228 |
Q |
| |
|
|||||||||| | ||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||| ||| ||||| || | ||||||||||| |
|
|
| T |
39623433 |
tacccaaacacctacttctgcaaaatttaagggaagtcttaggatccatgcaggaagagcatatgcccatgaaggaaaaaagagtaagtccctttgcttg |
39623532 |
T |
|
| Q |
229 |
tagaaaacaggaag |
242 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
39623533 |
taaaacacaggaag |
39623546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 2899261 - 2899373
Alignment:
| Q |
97 |
ggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgcaggaagagcatatgccc |
196 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| ||||||||||||||||||| ||| || | || || || |||||||||| ||| | ||||||||||| |
|
|
| T |
2899261 |
ggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagcatatgccc |
2899360 |
T |
|
| Q |
197 |
atggagggaaaaa |
209 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
2899361 |
atgaaggaaaaaa |
2899373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 44224625 - 44224692
Alignment:
| Q |
81 |
ttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttcca |
148 |
Q |
| |
|
||||||||||| || |||||| || ||||| |||||||||||||| || ||||||| || |||||||| |
|
|
| T |
44224625 |
ttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttcca |
44224692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 44212459 - 44212577
Alignment:
| Q |
81 |
ttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgca |
180 |
Q |
| |
|
|||||| |||| || |||||| || ||||| |||||||||||||| || ||||| | || ||||||||| || | | ||| || || || ||||||| | |
|
|
| T |
44212459 |
ttacctcccaacatttggatcaaatccaataacatagtaggtaagaaacacccagagagaaacttccactaatgagacgggaatcttgagaatccatgaa |
44212558 |
T |
|
| Q |
181 |
ggaagagcatatgcccatg |
199 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
44212559 |
ggaatagcatatgcccatg |
44212577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 44235435 - 44235553
Alignment:
| Q |
81 |
ttaccttccaatatatggatcgaaaccaatgacatagtaggtaaggaatacccaaacagcaacttccacaaaagttaaggggatttttaggatccatgca |
180 |
Q |
| |
|
||||||||||| || |||||| || ||||| |||||||||||||| || ||||| | || ||||||||| || | | ||| || || || ||||| | | |
|
|
| T |
44235435 |
ttaccttccaacatttggatcaaatccaataacatagtaggtaagaaacacccatagagaaacttccactaatgagatgggaatcttgagaatccacgaa |
44235534 |
T |
|
| Q |
181 |
ggaagagcatatgcccatg |
199 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
44235535 |
ggaatagcatatgcccatg |
44235553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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