View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_high_8 (Length: 295)
Name: NF2035_high_8
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_high_8 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 39644973 - 39645240
Alignment:
| Q |
16 |
ttaatttgttgtattataggattttatttatatgatatgttctgagtaccaattcaagttcctgttggcctataaaaggaaatgaaattgatttcacttt |
115 |
Q |
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| T |
39644973 |
ttaatttgttgtattataggattttat--atgtgatatgctctgagtaccaattcaagttcctgttggcctataaaaggaaatgaaattgatttcacttt |
39645070 |
T |
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| Q |
116 |
cagcttattctcaaatgggctctataatctttaggctttttccatgtttggagaaacatgtgtaagatgcctgtttcaaagaaacaattggcaaaggtgt |
215 |
Q |
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| T |
39645071 |
cagcttattctcaaatgggctctataatctttaggctttttccatgtttggagaaacatgtgtaagatgcctgtttcaaagaaacaattggcaaaggtgt |
39645170 |
T |
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| Q |
216 |
ttttgttgttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagta |
285 |
Q |
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| T |
39645171 |
ttttgttgttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagta |
39645240 |
T |
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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 21890348 - 21890262
Alignment:
| Q |
201 |
aattggcaaaggtgtttttgtt--gttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagta |
285 |
Q |
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| T |
21890348 |
aattggcaaaggtgttttagtttggttatagagattgcaatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagta |
21890262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 22616281 - 22616189
Alignment:
| Q |
195 |
agaaacaattggcaaaggtgtttttgtt--gttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagta |
285 |
Q |
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| T |
22616281 |
agaaagaattggcaaaggtgttttggtttggttatagagattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagta |
22616189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 41050036 - 41050128
Alignment:
| Q |
195 |
agaaacaattggcaaaggtgtttttgtt--gttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagta |
285 |
Q |
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| T |
41050036 |
agaaagaattggcaaaggtgttttggtttggttatagaaattgcgatgctttcgtgcaggtatatatatcttgggttattcgacagtgaagta |
41050128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 13623467 - 13623559
Alignment:
| Q |
195 |
agaaacaattggcaaaggtgtttttgtt--gttatagatattgcaatgatttcatgcaggtatatatatcttgggctattcgacagcgaagta |
285 |
Q |
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| T |
13623467 |
agaaagaattggcgaaggtgttttggtttggttatagagattgcgatgctttcgtgtaggtatatatatcttgggttattcgacagtgaagta |
13623559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 18959 - 19046
Alignment:
| Q |
195 |
agaaacaattggcaaaggtgtttttgtt--gttatagatattgcaatgatttcatgcaggtata--tatatcttgggctattcgacag |
278 |
Q |
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| T |
18959 |
agaaagaattggcaaaggtgttttggtttggttatagagattgtgatgctttcttgcaggtatatatatatcttgggttattcgacag |
19046 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 11168064 - 11168158
Alignment:
| Q |
195 |
agaaacaattggcaaaggtgtttttgtt--gttatagatattgcaatgatttcatgcaggtatatatatctt--gggctattcgacagcgaagta |
285 |
Q |
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| T |
11168064 |
agaaagaattggcaaaggtgttttggtttggttatagagattgtgatgcttttgtgtaggtatatatatcttgggggttattcgacagtgaagta |
11168158 |
T |
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