View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2035_low_1 (Length: 442)

Name: NF2035_low_1
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2035_low_1
NF2035_low_1
[»] chr8 (2 HSPs)
chr8 (1-442)||(29648841-29649283)
chr8 (33-75)||(10823818-10823860)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 29649283 - 29648841
Alignment:
Q  1 acttttggaacctaatggagacgcattatcctttaaaatagttttacaccgacttctgataagaactcattatatatgaaaaatgtttgannnnnnn-at 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  29649283 acttttggaacctaatggagacgcattatcctttaaaatagttttacaccgacttctgataagaactcattatatatgaaaaatgtttgattttttttat 29649184  T
Q  100 ttgatatgagtgtaaattccttagcaagttactcataaaattaactgaatcttccaaataaattcaggactatttactggatgcttttgggcactttttg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29649183 ttgatatgagtgtaaattccttagcaagttactcataaaattaactgaatcttccaaataaattcaggactatttactggatgcttttgggcactttttg 29649084  T
Q  200 gtgcatatgttttaatggctcatcttactggactgtacagaagacaccaaaattcactctacatggaaactgtctaccctgtgcttaggtaagtaaaagg 299  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29649083 gtgcatatgttttaatggctcatcttactggactgtacaaaagacaccaaaattcactctacatggaaactgtctaccctgtgcttaggtaagtaaaagg 29648984  T
Q  300 gctttcattgcaccatattgtcttcatatcagtgtttttagaaccggacaagccggttcaaccacgatcggagttgtacaagcaggaaatgactcatgtt 399  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29648983 gttttcgttgcaccatattgtcttcatatcagtgtttttagaaccggacaagccggttcaaccacgatcggagttgtacaagcaggaaatgactcatgtt 29648884  T
Q  400 tctgnnnnnnnnnngcaatgtgtttagtctcatgtttctacat 442  Q
    ||||          ||| |||||||||||||||||||||||||    
T  29648883 tctgttttgtttttgcagtgtgtttagtctcatgtttctacat 29648841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 10823860 - 10823818
Alignment:
Q  33 ttaaaatagttttacaccgacttctgataagaactcattatat 75  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||    
T  10823860 ttaaattagttttacaccgacttctaataagaactcatcatat 10823818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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