View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_low_11 (Length: 281)
Name: NF2035_low_11
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 43007318 - 43007064
Alignment:
| Q |
11 |
caaaggtcacaacgatagaataaaaggcaggggaggagggtgtccaatcgcatatatacatcaaacactccaaaaacctacaaaaatgtgaaattctaat |
110 |
Q |
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| T |
43007318 |
caaaggtcacaaccatagattaaaaggcaggggatgagggtgtccaatcgcatatatacatcaaacactccaaaaacctaaaaaaatgtgaaattctaat |
43007219 |
T |
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| Q |
111 |
acaacttcaatatcgaccctcacgtcaagtgtgagtcatgtgttatattcctacattacaatatgtaatcagatgttcttactctatttgataccatgtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007218 |
acaacttcaatatcgaccctcacgtcaagtgtgagtcatgtgctatattcctacattacaatatgtaatcagatgttcttactctatttgataccatgtt |
43007119 |
T |
|
| Q |
211 |
aaattggtttgaatctcatcctaaaagttagtttaaaaaataagagtgttcaaac |
265 |
Q |
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| T |
43007118 |
aaattggtttgaatcttatcccaaaagttagtttaaaaaataagagtgttcaaac |
43007064 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 27134241 - 27134201
Alignment:
| Q |
197 |
tttgataccatgttaaattggtttgaatctcatcctaaaag |
237 |
Q |
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| T |
27134241 |
tttgataccatgttaaatgagtttgaatctcatcctaaaag |
27134201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 50196986 - 50196942
Alignment:
| Q |
197 |
tttgataccatgttaaattggtttgaatctcatcctaaaagttag |
241 |
Q |
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| T |
50196986 |
tttgataccatgttaaataggtttggatctcatcccaaaagttag |
50196942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 33408175 - 33408217
Alignment:
| Q |
199 |
tgataccatgttaaattggtttgaatctcatcctaaaagttag |
241 |
Q |
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| T |
33408175 |
tgataccatgttaaatgagtttgaatctcatcccaaaagttag |
33408217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 23564540 - 23564582
Alignment:
| Q |
199 |
tgataccatgttaaattggtttgaatctcatcctaaaagttag |
241 |
Q |
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| T |
23564540 |
tgataccatgttaaataggtttggatctcatcccaaaagttag |
23564582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 47671754 - 47671804
Alignment:
| Q |
205 |
catgttaaattggtttgaatctcatcctaaaagttagtttaaaaaataaga |
255 |
Q |
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| T |
47671754 |
catgttaaatgagtttgaatctcatcccaaaagttagataaaaaaataaga |
47671804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 8837026 - 8837058
Alignment:
| Q |
199 |
tgataccatgttaaattggtttgaatctcatcc |
231 |
Q |
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| T |
8837026 |
tgataccatgttaaataggtttgaatctcatcc |
8837058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 55240510 - 55240474
Alignment:
| Q |
201 |
ataccatgttaaattggtttgaatctcatcctaaaag |
237 |
Q |
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||||||||||||||||| ||||||||||||| ||||| |
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| T |
55240510 |
ataccatgttaaattggcttgaatctcatcccaaaag |
55240474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 33804319 - 33804363
Alignment:
| Q |
199 |
tgataccatgttaaattggtttgaatctcatcctaaaagttagtt |
243 |
Q |
| |
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|||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
33804319 |
tgataccatgttaaataggcatgaatctcatcccaaaagttagtt |
33804363 |
T |
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