View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_low_12 (Length: 278)
Name: NF2035_low_12
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 10127647 - 10127394
Alignment:
| Q |
10 |
aatatcaaaatgctcttggcacggtagttaattgtcattcgttctcaatgactgttaactaccgctcgctaaatgagccaacaacaattaaatgtcgttg |
109 |
Q |
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| T |
10127647 |
aatatcaaaatgctctcagcgcggtagttaattgtcattcgttctcaatgactgttaactactgctcgctaaatgagccaacaacaattaaatgtcgttg |
10127548 |
T |
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| Q |
110 |
ggttccggctttcaccaaaatagcaacaacacctccacatttctccaaaacacaaatcaatctcttttcatttgcttaacatgccattgacttcagacaa |
209 |
Q |
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| T |
10127547 |
ggttccggctttcaccaaaatagcaacaacacctccacatttctccaaaacacaaatcaacctcttttcatttgcttaacatgccattgacttcagacaa |
10127448 |
T |
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| Q |
210 |
tagaaaccaataggttatattttatagctttatttgtgttatgacaattataat |
263 |
Q |
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| T |
10127447 |
tagaaaccaatagattatattttataactttatttgtgttatgacaattataat |
10127394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 52075809 - 52075918
Alignment:
| Q |
128 |
aatagcaacaacacctcc-acatttctccaaaacacaaatcaatctcttttcatttgcttaacatgccattgacttcagacaatagaaaccaataggtta |
226 |
Q |
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| T |
52075809 |
aatagcaacaacatctcccacacttctccaaaatacaaatcaacctcttttcatttgcttaacatgtcattttctaaagacaatagaaaacgatagatga |
52075908 |
T |
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| Q |
227 |
tattttatag |
236 |
Q |
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| T |
52075909 |
taatttatag |
52075918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 7290383 - 7290435
Alignment:
| Q |
145 |
cacatttctccaaaacacaaatcaatctcttttcatttgcttaacatgccatt |
197 |
Q |
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| T |
7290383 |
cacatttctctaaaacacaaaccaacctctttccatttgcttaacatgccatt |
7290435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 37234390 - 37234273
Alignment:
| Q |
75 |
tcgctaaatgagccaacaacaattaaatgtcgttgggttccggctttcaccaaaatagcaacaacacctcc-acatttctccaaaacacaaatcaatctc |
173 |
Q |
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| T |
37234390 |
tcgctaaatgaaccaacaacggttaactatcgttgggttctgatttgcatcaaaataaaaacatcacctcccacacttctccaaaacacaaatcaacctg |
37234291 |
T |
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| Q |
174 |
ttttcatttgcttaacat |
191 |
Q |
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| T |
37234290 |
cttctatttgcttaacat |
37234273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 15418814 - 15418752
Alignment:
| Q |
122 |
caccaaaatagcaacaacacctc-cacatttctccaaaacacaaatcaatctcttttcatttg |
183 |
Q |
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||||| ||||||||||||||||| |||| | |||||||||||||| ||| |||||| |||||| |
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| T |
15418814 |
caccacaatagcaacaacacctcacacactactccaaaacacaaaccaacctctttccatttg |
15418752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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