View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2035_low_14 (Length: 254)
Name: NF2035_low_14
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 21830049 - 21829813
Alignment:
| Q |
18 |
ttctaagggagatcatcttcatacgaggaaatctcataagataatgacctgcaatgggaacgtctcaatggagaattgtcatcattacaacaaactccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21830049 |
ttctaagggagatcatcttcatacgaggaaatctcataagataatgacctgcaataggaacgtctcaatggagaattttcatcattacaacaaactccat |
21829950 |
T |
|
| Q |
118 |
gccccataggagcgaggggagggagggttggaggtttcatatagtatttaacattatggcgttgaggggactaggacggtggacgatgatgggggtctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21829949 |
gccccataggagcgaggggagggagggttggaggtttcatatagtatttaacattatggcgttgaggggactaggacggtggacgatgatgggggtctta |
21829850 |
T |
|
| Q |
218 |
gactctaaatctttcggggacaaaaaatgtcgtgtct |
254 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21829849 |
gactttaaatctttcggggacaaaaaatgtcgtgtct |
21829813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University