View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_low_15 (Length: 237)
Name: NF2035_low_15
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4712550 - 4712330
Alignment:
| Q |
1 |
aagaaaaactattactcccattataaatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcga |
100 |
Q |
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| T |
4712550 |
aagaaaaactattactcccattataaatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcga |
4712451 |
T |
|
| Q |
101 |
tttggagatgatggtataatgtgtttgatgggattcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatcac |
200 |
Q |
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| T |
4712450 |
tttggagatgatggtataatgtgtttgatgggattcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatcac |
4712351 |
T |
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| Q |
201 |
ggtaatttgtgtagatacttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4712350 |
ggtaatttgtgtagatacttt |
4712330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 4846465 - 4846295
Alignment:
| Q |
26 |
aatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataat---gt |
122 |
Q |
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| T |
4846465 |
aatgccagcaagagacatgaaactccaaccacagcaaccatgaacgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgg |
4846366 |
T |
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| Q |
123 |
gtttgatgggattcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatg |
193 |
Q |
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| T |
4846365 |
gtttgttgggattcataccagccagattgtttttatcacttactttgaaaatctcgattccattcaatatg |
4846295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 4636584 - 4636668
Alignment:
| Q |
105 |
gagatgatggtataatgtgtttgatgggattcaaaccagcgaga---ttatttttatcacttattttgaaaatctcaattccatt |
186 |
Q |
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| T |
4636584 |
gagatgatagtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcactaattttgaaaatctcgattccatt |
4636668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 4784166 - 4784110
Alignment:
| Q |
145 |
gagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg |
201 |
Q |
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| T |
4784166 |
gagattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacg |
4784110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 4816595 - 4816539
Alignment:
| Q |
145 |
gagattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg |
201 |
Q |
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| T |
4816595 |
gagattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacg |
4816539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 4630692 - 4630747
Alignment:
| Q |
146 |
agattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg |
201 |
Q |
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| T |
4630692 |
agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacg |
4630747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 4672443 - 4672509
Alignment:
| Q |
148 |
attatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtag |
214 |
Q |
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| T |
4672443 |
attatttttatcacttactttgaaaatctcgattccatttaatgtgacatcactgtcttttgtgtag |
4672509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 4863689 - 4863751
Alignment:
| Q |
148 |
attatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgt |
210 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| | ||||||||||| ||||| |
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| T |
4863689 |
attatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgt |
4863751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 4643454 - 4643499
Alignment:
| Q |
149 |
ttatttttatcacttattttgaaaatctcaattccattcattatga |
194 |
Q |
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| T |
4643454 |
ttatttttgtcacttatttttaaaatctcgattccattcaatatga |
4643499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 18926069 - 18926001
Alignment:
| Q |
149 |
ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagata |
217 |
Q |
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|||||||| ||||||||||| |||||||| || ||||||| | |||||| |||||| |||| ||||||| |
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| T |
18926069 |
ttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttgagtagata |
18926001 |
T |
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