View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2035_low_18 (Length: 214)

Name: NF2035_low_18
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2035_low_18
NF2035_low_18
[»] chr6 (5 HSPs)
chr6 (1-214)||(1890527-1890740)
chr6 (141-214)||(1895517-1895590)
chr6 (95-183)||(1910928-1911015)
chr6 (141-196)||(1901928-1901983)
chr6 (76-196)||(1883959-1884078)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1890527 - 1890740
Alignment:
Q  1 taatacaaccaaccaacttttatctttcatttcagtttatggtccaaacctcatcatgaaaaacatctcacagaaattctgaacttcagcagaatttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1890527 taatacaaccaaccaacttttatctttcatttcagtttatggtccaaacctcatcatgaaaaacatctcatagaaattctgaacttcagcagaatttgtg 1890626  T
Q  101 attgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1890627 attgttgtgtaactgatagaacttagaagtcagagaaaatatgagaagaagatggtccttttacaaggatgttttgccacctgtggtgatcataggacag 1890726  T
Q  201 gaaactattgaaat 214  Q
    ||||||||||||||    
T  1890727 gaaactattgaaat 1890740  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 1895517 - 1895590
Alignment:
Q  141 atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcataggacaggaaactattgaaat 214  Q
    ||||||||||||||||| ||||||| |||||||||||||  | | |||||||||||||||||||||||||||||    
T  1895517 atgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaat 1895590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 1910928 - 1911015
Alignment:
Q  95 tttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgttttgccacctg 183  Q
    |||||||||||||||||||||| ||||| ||||||| | || ||| ||||||||||||||||| || |||| ||||||| |||||||||    
T  1910928 tttgtgattgttgtgtaactgaaagaacatagaagtgacag-aaacatgacaagaagatggtccttgtacatggatgttctgccacctg 1911015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 1901928 - 1901983
Alignment:
Q  141 atgacaagaagatggtcattttacaaggatgttttgccacctgtggtgatcatagg 196  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  1901928 atgacaagaagatggtcactttacatggatgttttgccacctgtggtgattatagg 1901983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 1883959 - 1884078
Alignment:
Q  76 attctgaacttcagcagaatttgtgattgttgtgtaactgatagaacttagaagtcagagaaaatatgacaagaagatggtcattttacaaggatgtttt 175  Q
    ||||||||||||| ||   |||||||||||||| ||   |||| |||||||||  || || ||| |||||||||| | |||| ||||||| |||| || |    
T  1883959 attctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatag-aaagatgacaagaaaacggtccttttacatggattttct 1884057  T
Q  176 gccacctgtggtgatcatagg 196  Q
    ||||||||| ||||| |||||    
T  1884058 gccacctgttgtgattatagg 1884078  T

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