View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_low_19 (Length: 213)
Name: NF2035_low_19
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 3223216 - 3223034
Alignment:
| Q |
17 |
atttttatactcattgtcaaataattgattttttggatgttgatgagatgtcacggaagctatggacatctcaatgctagagatcacagccatagtcaga |
116 |
Q |
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| T |
3223216 |
atttttatactcattgtcaaataattgattttttggatgttgatgaggtgtcacggaagctatggacatctcaatgctagagatcacagccatagtcaga |
3223117 |
T |
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| Q |
117 |
tcgtgcaaatggtccaatgtgacatatgctatttttctcctacatgatctctactttttcacatcaccactttttatcctttg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3223116 |
tcgtgcaaatggtccaatgtgacatatgctatttttctcctacatgatctctactttttcacatcaccactttttatcctttg |
3223034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 3282512 - 3282331
Alignment:
| Q |
17 |
atttttatactcattgtcaaataattgattttttggatgttgatgagatgtcacggaagctatggacatctcaatgctagagatcacagccatagtcaga |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282512 |
atttttatactcattgtcaaataattgattttttg-atgttgatgaggtgtcatggaagctatggacatctcaatgctagagatcacagccatagtcaga |
3282414 |
T |
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| Q |
117 |
tcgtgcaaatggtccaatgtgacatatgctatttttctcctacatgatctctactttttcacatcaccactttttatcctttg |
199 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3282413 |
tcgtgcaaatggtccaatgagacatatgctatttttctcctacatgatctctactttctcacatcaccactttttatcctttg |
3282331 |
T |
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