View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2035_low_2 (Length: 428)
Name: NF2035_low_2
Description: NF2035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2035_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 39 - 414
Target Start/End: Complemental strand, 26511811 - 26511436
Alignment:
| Q |
39 |
tgcagagtttaataaattatccttttccaaaaatatagcataactttaagagtagttttgttttccaagaaattctaaatttggttgnnnnnnnnnnnnn |
138 |
Q |
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| T |
26511811 |
tgcagagtttaataaattatccttttccaaaaatatagcataactttaagagtagttttgttttccaagaaattctaaatttggttgttttttgattttt |
26511712 |
T |
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| Q |
139 |
cactcaagttgcaatgagaaaatagtgacactgagacaaaggtccaaggagagagagattagaacaaatgacgaggattggttgagtgggggatacatga |
238 |
Q |
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| T |
26511711 |
cactcaagttgcaatgagaaaatagtgacactgagacaaaggtccaaggagagagagattagaacaaatgacgaggattggttgagtgggggatacatga |
26511612 |
T |
|
| Q |
239 |
aaatttgtagagaatttgcagccacaacttttttatgctatgtagatttttcaatatttctattatcttataacatgcaacaaaacaaaacaaatcacat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26511611 |
aaatttgtagagaatttgcagccacaacttttttatgctatgtagatttttcaatatttctattatcttataacatgcaacaaaacaaaacaaatcacat |
26511512 |
T |
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| Q |
339 |
ccacgtctctagttgtttcttctatttttgatataccaagtgtgacacataatggagaatcaacaaaatgatagat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26511511 |
ccacgtctctagttgtttcttctatttttgatataccaagtgtgacacataatggagaatcaacaaaatgatagat |
26511436 |
T |
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