View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_high_1 (Length: 828)
Name: NF20360_high_1
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 658; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 21 - 759
Target Start/End: Complemental strand, 37835253 - 37834516
Alignment:
| Q |
21 |
tgcccttcattcagaaggcagaagttgagcacaaaattgagtttatccactgtgatgcattatcaggcatcatcagtcttattgatgtaagnnnnnnnnn |
120 |
Q |
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| T |
37835253 |
tgcccttcattcagaaggcagaagttgagcacaaaattgagtttatccactgtgatgcattatcaggcatcatcagtcttattgatgtaagttttttttt |
37835154 |
T |
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| Q |
121 |
nnnnnnncattgacttgaatttgtgatttgttccaaccttttaaaaatatgagtagccatctgtattctgtattaattaataatatatttatattgttgt |
220 |
Q |
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| T |
37835153 |
tttttc-cattgacttgaatttgtgatttgttccaaccttttaaaaatatgagtagccatctgtattatgtattaattaataatatatttatattgttgt |
37835055 |
T |
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| Q |
221 |
tcaattgaaaatataactaactactatgggtgagcatgatgcaatccaaattgaatttctgtatgaatatatttatatgagcagcgtatccgaagcgtgt |
320 |
Q |
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| T |
37835054 |
tcaattgaaaatataactaactactatgggtgagcatgatccaatccaaattgaatttctgtatgaatatatttatatgagtagcgtatccgaagcgtgg |
37834955 |
T |
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| Q |
321 |
aggggtgagttggtttgatgaaaacttaaggaaggtgattggagatgggaaaggcacgaatttttggatggagcgatggagacaacttgcgtcatctctt |
420 |
Q |
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| T |
37834954 |
aggggtgagttggtttgatgaaaacttaaggaaggtgattggagatgggaaaggcacgaatttttggatggagcgatggagacaacttgcgtcatctctt |
37834855 |
T |
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| Q |
421 |
tagtagagtttatgatatatcgcttgataaagataaatgcctagcagatatgattgttgaaggagttggagaagaaggttgtttcaacgggaggaggaaa |
520 |
Q |
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| T |
37834854 |
tagtagagtttatgatatatcgcttgataaagataaatgcctagcagatatgattgttgaaggagttggagaagaaggttgtttcaacgggaggaggaaa |
37834755 |
T |
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| Q |
521 |
tggtttggttcttggagttgagaagttggagggtgggacaggaagatgtttggaagtgaggagagtcgagtttctcagttaaggtagcttaccatttgtt |
620 |
Q |
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| T |
37834754 |
cggtttggttcttggagttgagaagttggagggtgggacaggaagatgtttggaagtgaggagagtcgagtttctcagttaaggtagcttaccatttgtt |
37834655 |
T |
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| Q |
621 |
aggattcctagtttcctactcaggaaaatcttagtaaaagaggggtgaacctgaactcttcttctctatgtgttggtggattgtggcagagttgaaacaa |
720 |
Q |
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| T |
37834654 |
aggattcctagtttcctactgaggaaaatcttagtaaaagaggggtgaacctgaactcttcttctctatgtgttggtggattgtggcagagttgaaacaa |
37834555 |
T |
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| Q |
721 |
aaaatcatatattttttggttgtccaattttatctgttg |
759 |
Q |
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| T |
37834554 |
aaaatcatatattttttggtcgtccaattttatctgttg |
37834516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 755 - 806
Target Start/End: Complemental strand, 37834478 - 37834427
Alignment:
| Q |
755 |
tgttggagtctagtcccgtctgattgtgcacaggggtctggttctggttctg |
806 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
37834478 |
tgttggagtctagtcctgtctgattgtgcacaggggtctggttctggctctg |
37834427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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