View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_high_12 (Length: 227)
Name: NF20360_high_12
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37183604 - 37183819
Alignment:
| Q |
1 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183604 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
37183703 |
T |
|
| Q |
101 |
atgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
37183704 |
atgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatcaacc |
37183803 |
T |
|
| Q |
201 |
tcatcaccatcttcat |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
37183804 |
tcatcaccatcttcat |
37183819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37194736 - 37194951
Alignment:
| Q |
1 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194736 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
37194835 |
T |
|
| Q |
101 |
atgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
37194836 |
atgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatcaacc |
37194935 |
T |
|
| Q |
201 |
tcatcaccatcttcat |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
37194936 |
tcatcaccatcttcat |
37194951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 37202695 - 37202856
Alignment:
| Q |
21 |
gatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttc |
120 |
Q |
| |
|
||||| |||||||| || |||||||||||| |||||||| ||| || ||||||| ||| ||||| |||||||||||||| ||||| | ||| |||||| |
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| T |
37202695 |
gatatgattccacaaattatctccaacaacgctgaacggcctttcactgactttgtcaaacaattattagcaatatctccgtgcttgctgattatttttg |
37202794 |
T |
|
| Q |
121 |
ttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctt |
182 |
Q |
| |
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||| || ||||| |||||| | |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
37202795 |
ctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggctt |
37202856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 37212051 - 37212252
Alignment:
| Q |
5 |
cttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgc |
104 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||| | ||||| || ||||||| ||||| || ||||||| || |||||||| | |||||||||||| |
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| T |
37212051 |
ctttttgtccaaatctgatattatttcacagatcgtatccaagaaagctgaacgaaatttcaccgactttgtcacacaattcttggtaatatctccatgt |
37212150 |
T |
|
| Q |
105 |
ttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcat |
204 |
Q |
| |
|
|| ||||||||||||||||| |||| ||||||||| || |||||||| ||| ||| | | | ||||||||| ||||||| | | ||||||||||||| |
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|
| T |
37212151 |
ttgccgataatttttcttaatatcgacataaattctggcttcacttgatatatattaaccatgtcctcaggctggctttgcatttcagaatcaacctcat |
37212250 |
T |
|
| Q |
205 |
ca |
206 |
Q |
| |
|
|| |
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|
| T |
37212251 |
ca |
37212252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 37180587 - 37180684
Alignment:
| Q |
26 |
aattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaa |
124 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||| || ||||||| || || |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
37180587 |
aattccacagatgatctccaacaatttcgaacggtttttcaccgactttgtcacaca-ttcttagctatatctccatgcttgctgataatttttcttaa |
37180684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 7527711 - 7527817
Alignment:
| Q |
18 |
tctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataattt |
117 |
Q |
| |
|
||||| || ||| |||||||||| |||||||| ||| ||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||| || |
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| T |
7527711 |
tctgaaatgatttcacagatcattcccaacaacgctgcacggaatcttaccaactttgaagtgcaattcttcgcaatatctccatgcttgccgataactt |
7527810 |
T |
|
| Q |
118 |
ttcttaa |
124 |
Q |
| |
|
||||||| |
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|
| T |
7527811 |
ttcttaa |
7527817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 414167 - 414034
Alignment:
| Q |
1 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
100 |
Q |
| |
|
||||||||| |||||| |||| ||| ||| |||| || |||||| |||| ||||||||| || ||| |||||| | ||| ||||| |||||||||| |
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|
| T |
414167 |
cattctttttgtccaactctgctatgatttcacaaattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
414068 |
T |
|
| Q |
101 |
atgcttaccgataatttttcttaacatcggcata |
134 |
Q |
| |
|
|||||| ||||| ||||||||||| | ||||||| |
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| T |
414067 |
atgcttgccgatgatttttcttaataccggcata |
414034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 5366948 - 5366808
Alignment:
| Q |
81 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggc |
180 |
Q |
| |
|
|||||||||| ||||| || |||||| | | ||||||||||||| || ||||| ||||| || ||||||| ||||| || | ||| || |||||| ||| |
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|
| T |
5366948 |
caattcttagaaatatatcaatgcttgctggtaatttttcttaatataggcatgaattctggcttcacttcgtatcgataaaccgtgtcttcaggctggc |
5366849 |
T |
|
| Q |
181 |
tttgtacatttgaatcaacctcatcaccatcttcatctctc |
221 |
Q |
| |
|
||||||| | |||| |||| |||||||||| |||| |||| |
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|
| T |
5366848 |
tttgtacttccgaatgaaccccatcaccatcatcatttctc |
5366808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 5365232 - 5365154
Alignment:
| Q |
81 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccat |
159 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||| || ||||||| ||||||| |
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| T |
5365232 |
caattcttagaaatatatccatgcttgtcgataatttttcttaatataggcatgaattctggcttcactttatatccat |
5365154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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