View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_high_9 (Length: 265)
Name: NF20360_high_9
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 8676095 - 8675853
Alignment:
| Q |
4 |
gaggaggagcagagatgaaagtgttaagagaaaaatgatagatgaaaaaattatgcaaaagagtgggtattacatagaagagatttgaatttttctgaat |
103 |
Q |
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| T |
8676095 |
gaggagcagtagaaattaaagtgttaagagaaaaatgatagatgaaaaaattatgcaaa-gagtgggtattacatagaa---atttaaatttttctgaat |
8676000 |
T |
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| Q |
104 |
gaacatttcgaagaacttcttcctcggattccaatatttgnnnnnnnnttaatcccgcccatttccccgcacaaatttcgattttcaataatgtacattc |
203 |
Q |
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| T |
8675999 |
gaacattccgaggaacttcttcctcggattccaatatttgaaaaaaaattaatccaacccatttccccgcacaaatttcgattttcaataatgtacattc |
8675900 |
T |
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| Q |
204 |
cgaaaaacttttctcttcggtaattcaatgttgactgacaatgattt |
250 |
Q |
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| T |
8675899 |
cgaaaaaaatttctcttccgtaattcaatgttgaccgacaatgattt |
8675853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 33311276 - 33311155
Alignment:
| Q |
21 |
aaagtgttaagagaaaaatgatagatgaaaaaattatgcaaaagagtgggtattacatagaagagatttgaa-tttttctgaatgaacatttcgaagaac |
119 |
Q |
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||||||||| ||||||||||||| || ||||||||||| |||||||||| ||| ||||||| ||||||| ||||| | |||||||||| ||| |||| |
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| T |
33311276 |
aaagtgttatgagaaaaatgataaattaaaaaattatg-ttaagagtgggtgttatttagaagaaatttgaatttttttttaatgaacattccgaggaac |
33311178 |
T |
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| Q |
120 |
ttcttcctcggattccaatattt |
142 |
Q |
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| T |
33311177 |
ttcttcctttgaatccaatattt |
33311155 |
T |
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