View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_low_12 (Length: 256)
Name: NF20360_low_12
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 37183153 - 37183372
Alignment:
| Q |
22 |
atgcatgacttgggagacaacatagtcttaaatgaaaaaagttataaatgcagcaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagc |
121 |
Q |
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| T |
37183153 |
atgcatgacttgggagacaacatagtcttaaatgaaaaaagttataaatgcaacaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagc |
37183252 |
T |
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| Q |
122 |
gtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcaca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183253 |
gtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcaca |
37183352 |
T |
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| Q |
222 |
tatttctctcaacctctctg |
241 |
Q |
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|||||||||||||||||||| |
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| T |
37183353 |
tatttctctcaacctctctg |
37183372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 37194285 - 37194504
Alignment:
| Q |
22 |
atgcatgacttgggagacaacatagtcttaaatgaaaaaagttataaatgcagcaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194285 |
atgcatgacttgggagacaacatagtcttaaatgaaaaaagttataaatgcaacaagcaatcctaaaacaaaccatctaccactgagcatttcagaaagc |
37194384 |
T |
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| Q |
122 |
gtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcaca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194385 |
gtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgctatggccaatctctgtttgcaagcagtctctttatcaca |
37194484 |
T |
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| Q |
222 |
tatttctctcaacctctctg |
241 |
Q |
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|||||||||||||||||||| |
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| T |
37194485 |
tatttctctcaacctctctg |
37194504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 37202286 - 37202427
Alignment:
| Q |
84 |
ctaaaacaaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgct |
183 |
Q |
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||||| ||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| | || |||||| ||||||||| |
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| T |
37202286 |
ctaaatcaaaccatcaaccactgagcatttcagaaagcacttaactttagatttggcatacccaactgttatagatatcgcggtagactcatccttcgct |
37202385 |
T |
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| Q |
184 |
atggccaatctctgtttgcaagcagtctctttatcacatatt |
225 |
Q |
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| T |
37202386 |
ctagccaatctctctttgcaagcagtttcttcagcacatatt |
37202427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 37180156 - 37180293
Alignment:
| Q |
91 |
aaaccatctaccactgagcatttcagaaagcgtttgactttagatttagcatacccaactgttgtagatattgtggcagactcttccttcgctatggcca |
190 |
Q |
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|||||||| | |||||||| |||||||||||| ||||||||||| | ||||| ||||||| |||||||| || |||||| | ||| ||| || || |
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| T |
37180156 |
aaaccatccatcactgagcgtttcagaaagcgactgactttagatgtgcaataccgaactgtttgagatattgaggtagactcattctttgctgcggtca |
37180255 |
T |
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| Q |
191 |
atctctgtttgcaagcagtctctttatcacatatttct |
228 |
Q |
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|||| | ||||||||||||||||||| ||||||||||| |
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| T |
37180256 |
atctttctttgcaagcagtctctttaacacatatttct |
37180293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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