View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20360_low_17 (Length: 211)

Name: NF20360_low_17
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20360_low_17
NF20360_low_17
[»] chr8 (1 HSPs)
chr8 (11-193)||(7290626-7290808)
[»] chr3 (5 HSPs)
chr3 (11-100)||(40640593-40640683)
chr3 (20-99)||(47930634-47930714)
chr3 (20-101)||(45879466-45879548)
chr3 (20-99)||(49359596-49359676)
chr3 (17-98)||(19606879-19606961)
[»] chr5 (3 HSPs)
chr5 (11-98)||(10237415-10237503)
chr5 (32-100)||(22616493-22616562)
chr5 (16-103)||(36055838-36055926)
[»] chr2 (7 HSPs)
chr2 (11-102)||(41643869-41643961)
chr2 (11-100)||(6177774-6177864)
chr2 (11-95)||(18947557-18947642)
chr2 (11-100)||(34441880-34441970)
chr2 (16-68)||(18059326-18059378)
chr2 (11-56)||(18779360-18779405)
chr2 (11-100)||(19073356-19073447)
[»] chr7 (3 HSPs)
chr7 (11-68)||(22955271-22955328)
chr7 (11-99)||(23402330-23402419)
chr7 (11-68)||(37854253-37854310)
[»] chr4 (1 HSPs)
chr4 (17-100)||(2704511-2704595)
[»] chr1 (3 HSPs)
chr1 (20-68)||(16127552-16127600)
chr1 (20-101)||(13876887-13876969)
chr1 (16-61)||(10758264-10758309)
[»] scaffold0200 (1 HSPs)
scaffold0200 (11-68)||(24776-24833)
[»] chr6 (1 HSPs)
chr6 (11-100)||(19631748-19631838)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 7290808 - 7290626
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaatcatttgcacgacttcatcatagaattttcctatatatattt 110  Q
    |||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||     
T  7290808 gtgacatgaattaaacgcacaaatgatcaatgattcaccatttaacgtcaccagaaaatcatttgcatgacttcaccatagaattttcctatatctatta 7290709  T
Q  111 atcgtgtagaatgagaatatgcttgttgaatcaagtaatccaagaaacatgttaaattctgtccatttgaattaataaggatc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7290708 atcgtgtagaatgagaatatgcttgttgaatcaagtaatccaagaaacatgttaagttctgtccatttgaattaataaggatc 7290626  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 40640593 - 40640683
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcct 100  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||  || ||||||| ||||||||||||||    
T  40640593 gtgacatggattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 40640683  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 47930634 - 47930714
Alignment:
Q  20 attaaacacacaaatgatcaataattgaccatttaacgtcaccag-aaaatcatttgcacgacttcatcatagaattttcc 99  Q
    |||||| ||||||||| ||||| ||||  |||||||| ||||||| |||||||||| || ||||||| |||||||||||||    
T  47930634 attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 45879466 - 45879548
Alignment:
Q  20 attaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttccta 101  Q
    |||||| ||||||||| ||||| |||| ||||||||| | ||||||||| |||||  || ||||||| |||||||||||||||    
T  45879466 attaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatgacttcagcatagaattttccta 45879548  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 49359596 - 49359676
Alignment:
Q  20 attaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcc 99  Q
    |||||| ||||||||| ||||| |||| ||||||||| |||| | |||| |||||| || ||||||| |||||||||||||    
T  49359596 attaaatacacaaatgttcaatgattggccatttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttcc 49359676  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 19606879 - 19606961
Alignment:
Q  17 tgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttc 98  Q
    ||||||||| ||||||||| ||||| ||||  |||||||| ||||||||||| ||||||  |  |||||| ||||||||||||    
T  19606879 tgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataacttcaccatagaattttc 19606961  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 10237503 - 10237415
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttc 98  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||| |||| |||||| |||||| || |||||||  |||||||||||    
T  10237503 gtgaaatgaattaaatacacaaatgctcaatgattgaccatttaacttcactagaaaagtcattttcatgacttcacaatagaattttc 10237415  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 22616562 - 22616493
Alignment:
Q  32 aatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcct 100  Q
    |||| ||||| |||| ||||||||| ||||||||||| |||||| || ||||||| ||||||||||||||    
T  22616562 aatgctcaatgattggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcct 22616493  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 36055838 - 36055926
Alignment:
Q  16 atgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcctata 103  Q
    ||||||||||  |||||||| ||||| |||||||||||||| |||| |||||| |||||  || ||| ||| |||| ||||||||||||    
T  36055838 atgaattaaattcacaaatgctcaatgattgaccatttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcctata 36055926  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 41643961 - 41643869
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcctat 102  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||| |||||| |||| |||||  || ||||||| ||||||||||| ||||    
T  41643961 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttttctat 41643869  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 6177864 - 6177774
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcct 100  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||  || ||||||  | ||||||||||||    
T  6177864 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccgtagaattttcct 6177774  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 18947557 - 18947642
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaatt 95  Q
    |||| ||| |||||| ||||||||| ||||| |||||||||||||| ||||||||||| | |||| || ||||||| |||||||||    
T  18947557 gtgacatggattaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgacttcaccatagaatt 18947642  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 34441880 - 34441970
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcct 100  Q
    |||| |||||||||| ||||||||  ||||||||||  |||||||| | |||| |||| |||||| || ||||||| ||||||||||||||    
T  34441880 gtgacatgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcct 34441970  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 18059326 - 18059378
Alignment:
Q  16 atgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa 68  Q
    |||||||||| ||||||||  |||||||||||||||||||| |||||| ||||    
T  18059326 atgaattaaatacacaaatattcaataattgaccatttaacatcaccaaaaaa 18059378  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 18779360 - 18779405
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaac 56  Q
    |||| |||||||||| ||||||||| ||||| ||||||||||||||    
T  18779360 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaac 18779405  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 19073447 - 19073356
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcacc--agaaaatcatttgcacgacttcatcatagaattttcct 100  Q
    |||| ||| |||||| ||||||||  ||||| |||||||||||||| |||||  | |||||||||  ||  |||||| ||||||||||||||    
T  19073447 gtgacatggattaaatacacaaattctcaatgattgaccatttaacttcaccaaaaaaaatcattctcataacttcaccatagaattttcct 19073356  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 22955271 - 22955328
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa 68  Q
    |||| ||| |||||| ||||||||| |||||||||||||||||||| |||||||||||    
T  22955271 gtgacatggattaaatacacaaatgttcaataattgaccatttaacttcaccagaaaa 22955328  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 23402330 - 23402419
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcc 99  Q
    |||| |||||||||| ||||| ||| ||||| |||||||||||||| ||||||||||| |||||  || ||||||  |||||||||||||    
T  23402330 gtgacatgaattaaatacacagatgttcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcc 23402419  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 37854253 - 37854310
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa 68  Q
    |||| ||| |||||| ||||||||| |||||||||||||||||||  |||||||||||    
T  37854253 gtgacatggattaaatacacaaatgctcaataattgaccatttaatttcaccagaaaa 37854310  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 2704595 - 2704511
Alignment:
Q  17 tgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcct 100  Q
    ||||||||| ||||||||  ||||| ||||| |||||||| ||||||||||| |||||| || ||||||| |||| |||||||||    
T  2704595 tgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcct 2704511  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 16127600 - 16127552
Alignment:
Q  20 attaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa 68  Q
    |||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  16127600 attaaatacacaaatgatcaatgattgaccatttaacttcaccagaaaa 16127552  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 13876887 - 13876969
Alignment:
Q  20 attaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttccta 101  Q
    |||||| ||||||||  ||||| ||||| |||||||| |||||| |||| |||||| ||  |||||| |||||||||||||||    
T  13876887 attaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcataacttcaccatagaattttccta 13876969  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 10758264 - 10758309
Alignment:
Q  16 atgaattaaacacacaaatgatcaataattgaccatttaacgtcac 61  Q
    |||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  10758264 atgaattaaatacacaaatgctcaatgattgaccatttaacttcac 10758309  T

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Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 24776 - 24833
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa 68  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||  |||||||||||    
T  24776 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaatttcaccagaaaa 24833  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 19631838 - 19631748
Alignment:
Q  11 gtgagatgaattaaacacacaaatgatcaataattgaccatttaacgtcaccagaaaa-tcatttgcacgacttcatcatagaattttcct 100  Q
    |||| ||| |||||| ||||||||| ||||| ||||  |||||||| ||||||||||| |||||   | ||||||| ||||||||||||||    
T  19631838 gtgacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcct 19631748  T

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