View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_low_3 (Length: 599)
Name: NF20360_low_3
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 166 - 581
Target Start/End: Complemental strand, 4716363 - 4715947
Alignment:
| Q |
166 |
aacacctca-attccggcttgttaattacttccaggccgggtttacttatattttatgcccaaagcaatgcctaatcattaattgcagtttaaagataac |
264 |
Q |
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| T |
4716363 |
aacacctcatattacggcttgttaattacttccaggccgggtttacttaaattttatgctcaaagcaatgcctaatcattaattgcagtttaaagataac |
4716264 |
T |
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| Q |
265 |
gtgagagaatagaaaatcagaatcagcatataaaacaaatttaatcttataaatatgttggatcagttttgttaaagtagctagcaagagcctcacaaat |
364 |
Q |
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| T |
4716263 |
gtgagagaatagaaaatcagaatcagcatataaaacaaatttaatcttataaatatgttggatcagttttgttaaagtagctagcaagagcctcacaaat |
4716164 |
T |
|
| Q |
365 |
actaatcatgcaagttggtaatataaatgctcaattgaaaagacaactcgattgtgagcttagagacgttgaattgaaaaggttaattatatctagagac |
464 |
Q |
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| T |
4716163 |
actaatcatgcaagttggtaatataaatgctcaattgaaaagacaactcgattgtgagcttagagacgttgaattgaaaaggttaattatatctagagac |
4716064 |
T |
|
| Q |
465 |
atacttttgatccaatcgaatatttagtgctaaatattggatttagtgtttaatacatgtatataaaaatttgaatacgtgataagaaattattaacttt |
564 |
Q |
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| T |
4716063 |
atacttttgatccaatcgaatatttagtgctaaatattggatttagtgttcaatacatgtatataaaaatttgaacacgtgataagaaattattaacttt |
4715964 |
T |
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| Q |
565 |
taaacgtacgttaatta |
581 |
Q |
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| T |
4715963 |
taaacgtacgttaatta |
4715947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 4716520 - 4716429
Alignment:
| Q |
9 |
gtgagatgaagcaattccctataaattctctctcatattcctaaacaaaaggcctctcatattgtatctgataaaatatattgtccatcttg |
100 |
Q |
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| T |
4716520 |
gtgagatgaagcaattccctataaattatctctcagattcctaaacaaaaggcctctcatattgtatctgataaaatatattgtccatcttg |
4716429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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