View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_low_4 (Length: 574)
Name: NF20360_low_4
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 31645957 - 31645514
Alignment:
| Q |
18 |
aatactatactaaaagattaactttgaagtttgaac-atgtcgatatataattaaagaatataagcatatcatgtgtaaagtgatattccagggtttcga |
116 |
Q |
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||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31645957 |
aatactatattaaaatattaactttgaagtttgaacgatgtcgatatataattaaagaatataggcatatcatgtgtaaagtgatattccagggtttcga |
31645858 |
T |
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| Q |
117 |
acaatgcctctcttctaaaacttcaacaggttataagagaagtcaaaagcagcagcaatccatcttagcacatgtttgtttttatatatttttccctcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31645857 |
acaatgcctctcttctaaaacttcaacaggttataagagaagtcaaaagcagcagcaatccatcttagcacatgtttgtttttatatatttttccctcat |
31645758 |
T |
|
| Q |
217 |
gatattcaaacctttcctaaaccaagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtttgatgaagtgtttatgggtgagggtta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
31645757 |
gatattcaaacctttcctaaaccaagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtatgatgaagtgtttttgggtgagggtta |
31645658 |
T |
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| Q |
317 |
gttaatctgaaacataaatgatgcggttat-tttgattttgaaattgaaatgttatagatcatctatcatattattttttcaattttc-aaaattttaga |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31645657 |
gttaatctgaaacataaatgatgcggttataattgattttgaaattgaaatcttatagatcatctatcatattattttttcaattttcaaaaattttaga |
31645558 |
T |
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| Q |
415 |
tatctaccaaaatagagacttttggtatgaataattattgaaaa |
458 |
Q |
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| T |
31645557 |
tatctaccaaaatagagacttttggtatgaataattattgaaaa |
31645514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 195 - 383
Target Start/End: Complemental strand, 31636536 - 31636351
Alignment:
| Q |
195 |
tttttatatatttttccctcatgatattcaaacctttcctaaac--caagaaaatatcttgacctctaaaaatatcactgaataagctatttttgtttga |
292 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
31636536 |
tttttttatctttttccctcatgatattcaaacctttcctaaacgacaagaaaatatcttgacctctaaaaatattattgaata-gctatttttgtttga |
31636438 |
T |
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| Q |
293 |
tgaagtgtttatgggtgagggttagttaatctgaaacataaatgatgcggttat-tttgattttgaaattgaaatgttata-gatcatctatc |
383 |
Q |
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| T |
31636437 |
tgaagtgtttttgggtgagtattagttgatttgaaacataaat------gttataattgattttgaaattgaaatggtatacgatcatctatc |
31636351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 471 - 569
Target Start/End: Complemental strand, 31644743 - 31644645
Alignment:
| Q |
471 |
ttgtgacttgggtgtcaaggatatcgtctttgagaccgacatccttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttgcttct |
569 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31644743 |
ttgtgacttgggtgtgaaggatatcgtctttgagactgacatccttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttgattct |
31644645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 12824193 - 12824143
Alignment:
| Q |
514 |
cttggtctttttcatatggccatgaaaggtcatgccacttgtactcctttg |
564 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||| ||||| |||| |
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| T |
12824193 |
cttgctctttttcatatggccaagaaaggtcataccacttatactcatttg |
12824143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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