View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20360_low_5 (Length: 569)

Name: NF20360_low_5
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20360_low_5
NF20360_low_5
[»] chr1 (9 HSPs)
chr1 (17-393)||(5934013-5934390)
chr1 (21-129)||(5935977-5936082)
chr1 (475-543)||(5933026-5933094)
chr1 (333-393)||(5933934-5933995)
chr1 (475-543)||(19253644-19253712)
chr1 (405-439)||(5933880-5933914)
chr1 (439-469)||(29836237-29836267)
chr1 (441-469)||(39076266-39076294)
chr1 (441-469)||(40981638-40981666)
[»] chr7 (3 HSPs)
chr7 (475-543)||(18196927-18196995)
chr7 (441-469)||(13761781-13761809)
chr7 (441-469)||(24759474-24759502)
[»] chr3 (2 HSPs)
chr3 (437-469)||(52126881-52126913)
chr3 (440-469)||(29129129-29129158)
[»] chr5 (4 HSPs)
chr5 (413-443)||(26044885-26044915)
chr5 (439-469)||(40946708-40946738)
chr5 (440-469)||(30463749-30463778)
chr5 (441-469)||(4077838-4077866)
[»] scaffold0005 (1 HSPs)
scaffold0005 (440-469)||(230463-230492)
[»] chr4 (14 HSPs)
chr4 (436-469)||(1678493-1678526)
chr4 (440-469)||(14210463-14210492)
chr4 (440-469)||(14211432-14211461)
chr4 (440-469)||(14212383-14212412)
chr4 (440-469)||(14213352-14213381)
chr4 (440-469)||(14214320-14214349)
chr4 (440-469)||(14215289-14215318)
chr4 (440-469)||(14218160-14218189)
chr4 (440-469)||(14219130-14219159)
chr4 (440-469)||(14220099-14220128)
chr4 (440-469)||(14221050-14221079)
chr4 (440-469)||(14222019-14222048)
chr4 (440-469)||(14222988-14223017)
chr4 (440-469)||(14586882-14586911)
[»] chr8 (1 HSPs)
chr8 (441-469)||(38681137-38681165)
[»] chr2 (1 HSPs)
chr2 (441-469)||(26449093-26449121)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 5934390 - 5934013
Alignment:
Q  17 agctaccatctccatttcgacctgctttcatcaatatatcccttacttgcttttctgtcatggctatgttttgtggcagacccttcaacttgaactgatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934390 agctaccatctccatttcgacctgctttcatcaatatatcccttacttgcttttctgtcatggctatgttttgtggcagacccttcaacttgaactgatc 5934291  T
Q  117 tggctctctaactctaactatagggatgtagacaatcattttatcttatatgtactgtgttatttactctctctaagctaggctgggatatggttttgga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934290 tggctctctaactctaactatagggatgtagacaatcattttatcttatatgtactgtgttatttactctctctaagctaggctgggatatggttttgga 5934191  T
Q  217 aatgccaaatttatatactaacaaaaaggagttaagattatgttctccatatcttcttcctttacttgctgttttggtgaagttatatttatttatttca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5934190 aatgccaaatttatatactaacaaaaaggagttaagattatgttctccatatcttcttcctttacttgctgttttggtgatgttatatttatttatttca 5934091  T
Q  317 gccgaaagaacacttatttaatgtaatgtaacgtgga-cctatgtacaaaaacttgtgtggggtcctgccttcactac 393  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  5934090 gccgaaagaacacttatttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5934013  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 5936082 - 5935977
Alignment:
Q  21 accatctccatttcgacctgctttcatcaatatatcccttacttgcttttctgtcatggctatgttttgtggcagacccttcaacttgaactgatctggc 120  Q
    ||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  5936082 accatctccatctcgatctgctttcatcaatataccccttatttgcttttctgtcatggctatgttttgtggcagacccttcaacttgaac---tctggc 5935986  T
Q  121 tctctaact 129  Q
    |||||||||    
T  5935985 tctctaact 5935977  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 475 - 543
Target Start/End: Complemental strand, 5933094 - 5933026
Alignment:
Q  475 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttca 543  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5933094 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcagacttca 5933026  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 5933995 - 5933934
Alignment:
Q  333 tttaatgtaatgtaacgtggacc-tatgtacaaaaacttgtgtggggtcctgccttcactac 393  Q
    |||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  5933995 tttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5933934  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 543
Target Start/End: Complemental strand, 19253712 - 19253644
Alignment:
Q  475 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttca 543  Q
    |||| ||||| |||||||| || ||||||| ||| || | || ||||||||||||||||||||||||||    
T  19253712 tggtggatgagaatggcaatgtctggaactgcagccttctgtattcggagactccttatgcaaacttca 19253644  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 439
Target Start/End: Complemental strand, 5933914 - 5933880
Alignment:
Q  405 cctttctaatcatatcatacttcatacttatttct 439  Q
    |||||||||||||||||||||||||| ||||||||    
T  5933914 cctttctaatcatatcatacttcatatttatttct 5933880  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 29836237 - 29836267
Alignment:
Q  439 taatcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||||    
T  29836237 taatcctttatatctaatcctagcaaacatg 29836267  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 39076294 - 39076266
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  39076294 atcctttatatctaatcctagcaaacatg 39076266  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Complemental strand, 40981666 - 40981638
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatg 40981638  T

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Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 475 - 543
Target Start/End: Original strand, 18196927 - 18196995
Alignment:
Q  475 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttca 543  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18196927 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcaaacttca 18196995  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 13761781 - 13761809
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  13761781 atcctttatatctaatcctagcaaacatg 13761809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 24759474 - 24759502
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatg 24759502  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 52126881 - 52126913
Alignment:
Q  437 tctaatcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||||||    
T  52126881 tctaatcctttatatctaatcctagcaaacatg 52126913  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Original strand, 29129129 - 29129158
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  29129129 aatcctttatatctaatcctagcaaacatg 29129158  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 443
Target Start/End: Complemental strand, 26044915 - 26044885
Alignment:
Q  413 atcatatcatacttcatacttatttctaatc 443  Q
    |||||||||||||||||||||||||||||||    
T  26044915 atcatatcatacttcatacttatttctaatc 26044885  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 40946708 - 40946738
Alignment:
Q  439 taatcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||||    
T  40946708 taatcctttatatctaatcctagcaaacatg 40946738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Original strand, 30463749 - 30463778
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  30463749 aatcctttatatctaatcctagcaaacatg 30463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 4077838 - 4077866
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  4077838 atcctttatatctaatcctagcaaacatg 4077866  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Original strand, 230463 - 230492
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  230463 aatcctttatatctaatcctagcaaacatg 230492  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 1678526 - 1678493
Alignment:
Q  436 ttctaatcctttatatctaatcctagcaaacatg 469  Q
    |||| |||||||||||||||||||||||||||||    
T  1678526 ttctgatcctttatatctaatcctagcaaacatg 1678493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14210492 - 14210463
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14210492 aatcctttatatctaatcctagcaaacatg 14210463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14211461 - 14211432
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14211461 aatcctttatatctaatcctagcaaacatg 14211432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14212412 - 14212383
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14212412 aatcctttatatctaatcctagcaaacatg 14212383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14213381 - 14213352
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14213381 aatcctttatatctaatcctagcaaacatg 14213352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14214349 - 14214320
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14214349 aatcctttatatctaatcctagcaaacatg 14214320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14215318 - 14215289
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14215318 aatcctttatatctaatcctagcaaacatg 14215289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14218189 - 14218160
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14218189 aatcctttatatctaatcctagcaaacatg 14218160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14219159 - 14219130
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14219159 aatcctttatatctaatcctagcaaacatg 14219130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14220128 - 14220099
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14220128 aatcctttatatctaatcctagcaaacatg 14220099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14221079 - 14221050
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14221079 aatcctttatatctaatcctagcaaacatg 14221050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14222048 - 14222019
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14222048 aatcctttatatctaatcctagcaaacatg 14222019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14223017 - 14222988
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14223017 aatcctttatatctaatcctagcaaacatg 14222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 14586911 - 14586882
Alignment:
Q  440 aatcctttatatctaatcctagcaaacatg 469  Q
    ||||||||||||||||||||||||||||||    
T  14586911 aatcctttatatctaatcctagcaaacatg 14586882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 38681137 - 38681165
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  38681137 atcctttatatctaatcctagcaaacatg 38681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 26449093 - 26449121
Alignment:
Q  441 atcctttatatctaatcctagcaaacatg 469  Q
    |||||||||||||||||||||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatg 26449121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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