View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_low_6 (Length: 523)
Name: NF20360_low_6
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 2 - 446
Target Start/End: Complemental strand, 42003821 - 42003377
Alignment:
| Q |
2 |
actttgaaagtaacgtatagtacattgtgtatgttttactagaagatacatgtgttggtcccatagacattaatgcattgtctaccttagagtttgttaa |
101 |
Q |
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| T |
42003821 |
actttgaaagtaacgtatagtacattgtgtatgttttactagaagatacatgtgttggtcccatagacattaatgcattgtctaccttagagtttgttaa |
42003722 |
T |
|
| Q |
102 |
aatcatgtgatcttgacagattcatgaacgttaagagtgttctccagccttgcaggtcttgaaattgaaacttgtcttcgagagagacagctaatttaat |
201 |
Q |
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| T |
42003721 |
aatcatgtgatcttgacagattcatgaacgttaagagtgttctccagccttgcaggtcttgaaattgaaacttgtcttcgagagagacagctaatttaat |
42003622 |
T |
|
| Q |
202 |
gacccaaaaacatgttttcattttcaagggtaggatgatagtgttactatctactgggagtgaagggtgccccactatattagtagagaccataacaatt |
301 |
Q |
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| T |
42003621 |
gacccaaaaacatgttttcattttcaagggtaggatgatagtgttactatctactgggagtgaagggtgccccactatattagtagagaccataacaatt |
42003522 |
T |
|
| Q |
302 |
tatctagtttatgccaaaacaatcttgtctattttttactcttgnnnnnnnntaatgctaacaaatgttcttaaaacactagttaagaaaacgtatataa |
401 |
Q |
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| T |
42003521 |
tatctagtttatgccaaaacaatcttgtcttttttttactcttgaaaaaaaataatgctaacaaatgttcttaaaacactagttaagaaaacgtatataa |
42003422 |
T |
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| Q |
402 |
taatttattttgaaatttgtgcaaaaaatactcttttcaatgaaa |
446 |
Q |
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| T |
42003421 |
taatttattttgaaatttgtgcacaaaatactcttttcaatgaaa |
42003377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 42012519 - 42012292
Alignment:
| Q |
56 |
ttggtcccatagacattaatgcattgtctaccttagagtttgttaaaatcatgtgatct-------tgacagattcatgaacgttaa-gagtgttctcca |
147 |
Q |
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| T |
42012519 |
ttggtcccaaagaca--aatgcattgtctaccttagagtttgttaaaatcatgtgatatatggtgttgatggattcatgaatgttaaagagtgttc--ca |
42012424 |
T |
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| Q |
148 |
gccttgcaggtcttgaaattgaaacttgtcttcg-agagagacagctaatttaatgacccaaaaacatgttttcattttcaagggtaggatgatagtgtt |
246 |
Q |
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||||||||| || ||||||||||| ||||||| | ||| |||||||||||| | ||||||| ||| || | | ||||| |||| || |||| |||||| |
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| T |
42012423 |
gccttgcagatcatgaaattgaaaattgtcttagcagatagacagctaattgagcgacccaagaacttgctcttgttttccagggaagcatgagagtgtt |
42012324 |
T |
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| Q |
247 |
actatctactgggagtgaagggtgccccacta |
278 |
Q |
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|||||||| ||||||| |||||| |||||||| |
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| T |
42012323 |
actatctattgggagtaaagggtaccccacta |
42012292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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