View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20360_low_8 (Length: 466)

Name: NF20360_low_8
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20360_low_8
NF20360_low_8
[»] chr4 (2 HSPs)
chr4 (18-453)||(4074936-4075372)
chr4 (81-130)||(5232904-5232953)
[»] chr7 (2 HSPs)
chr7 (20-154)||(25824790-25824924)
chr7 (95-144)||(37804102-37804151)
[»] chr1 (2 HSPs)
chr1 (86-133)||(19411833-19411880)
chr1 (86-133)||(50750156-50750203)
[»] chr2 (2 HSPs)
chr2 (98-144)||(7821871-7821917)
chr2 (95-144)||(7812337-7812386)
[»] chr5 (1 HSPs)
chr5 (86-130)||(15113355-15113399)
[»] chr3 (1 HSPs)
chr3 (84-132)||(25962716-25962764)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 4075372 - 4074936
Alignment:
Q  18 catctatctataggaagcaatgggagcctttaacagaagagcaaatatcaaatccaaaatcttatgcagattgcatacattggtgtctccctggtgtgcc 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4075372 catctatctataggaagcaatgggagcctctaacagaagagcaaatatcaaatccaaaatcttatgcagattgcatacattggtgtctccctggtgtgcc 4075273  T
Q  118 tgatacttggaatgagcttctttatgcctatattttccatagatgacaaacatttgatattgaaaactttaagtacaatacgttacatttatgtttggtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    
T  4075272 tgatacttggaatgagcttctttatgcctatattttccatagatgacaaacatttgatattgaaaacttgaagtaaaatatgttacatttatctttggtt 4075173  T
Q  218 tggtttgttatcttgttttctcttgatgttgactgaggtgagggaagttgaagtgtaaagaatattgttatccctaatccttaaaaaacatgcatatgct 317  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4075172 tgttttgttatcttgttttctcttgatgttgactgaggtgagggaagttgaagtgtaaagaatattgttatccctaatccttaaaaaacatgcatatgct 4075073  T
Q  318 agtg-nnnnnnnnnaatgtcatgtatctttttcatcacaatgatacttgtttaccttattaaacaaaaaattagacctagtttcaagctgaatgacataa 416  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4075072 agtgttttttttttaatgtcatgtatctttttcatcacaatgatacttgtttaccttattaaacaaaaaattagacctagtttcaagctgaatgacataa 4074973  T
Q  417 aagtaatggcgacagtagttagatccaaaatattctt 453  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4074972 aagtaatggcgacagtagttggatccaaaatattctt 4074936  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 5232904 - 5232953
Alignment:
Q  81 atgcagattgcatacattggtgtctccctggtgtgcctgatacttggaat 130  Q
    |||| ||||| |||||||||||| | |||||||| |||||||||||||||    
T  5232904 atgctgattgtatacattggtgtttgcctggtgttcctgatacttggaat 5232953  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 25824790 - 25824924
Alignment:
Q  20 tctatctataggaagcaatgggagcctttaacagaagagcaaatatcaaatccaaaatcttatgcagattgcatacattggtgtctccctggtgtgcctg 119  Q
    |||||||||||||| || ||||| ||| ||||  |||| || ||||||||||||||   |||||||||||||||||||||||| || || || || ||||    
T  25824790 tctatctataggaaacagtgggaacctctaactcaagaacagatatcaaatccaaatggttatgcagattgcatacattggtgcctaccaggagttcctg 25824889  T
Q  120 atacttggaatgagcttctttatgcctatattttc 154  Q
    ||   ||||||||||||||||||||||||||||||    
T  25824890 atgtatggaatgagcttctttatgcctatattttc 25824924  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 37804102 - 37804151
Alignment:
Q  95 cattggtgtctccctggtgtgcctgatacttggaatgagcttctttatgc 144  Q
    |||||||||||||||||||| || ||| | ||||||||| ||||||||||    
T  37804102 cattggtgtctccctggtgttcccgattcgtggaatgagattctttatgc 37804151  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 19411880 - 19411833
Alignment:
Q  86 gattgcatacattggtgtctccctggtgtgcctgatacttggaatgag 133  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||||    
T  19411880 gattgcagtcattggtgcctccctggtgtgcctgatatttggaatgag 19411833  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 50750203 - 50750156
Alignment:
Q  86 gattgcatacattggtgtctccctggtgtgcctgatacttggaatgag 133  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||||    
T  50750203 gattgcagccattggtgcctccctggtgtgcctgatatttggaatgag 50750156  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 7821871 - 7821917
Alignment:
Q  98 tggtgtctccctggtgtgcctgatacttggaatgagcttctttatgc 144  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||||    
T  7821871 tggtgtcttcctggtgtacctgatacatggaatgagctactttatgc 7821917  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 7812337 - 7812386
Alignment:
Q  95 cattggtgtctccctggtgtgcctgatacttggaatgagcttctttatgc 144  Q
    ||||||||||| || ||||| |||||||| ||||||||||| ||||||||    
T  7812337 cattggtgtcttcccggtgtacctgatacatggaatgagctactttatgc 7812386  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 15113355 - 15113399
Alignment:
Q  86 gattgcatacattggtgtctccctggtgtgcctgatacttggaat 130  Q
    |||||||  ||||||||||| |||||||| |||||||||||||||    
T  15113355 gattgcagccattggtgtctgcctggtgttcctgatacttggaat 15113399  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 25962716 - 25962764
Alignment:
Q  84 cagattgcatacattggtgtctccctggtgtgcctgatacttggaatga 132  Q
    |||||||||  ||||||||||| |||||| | |||||||||||||||||    
T  25962716 cagattgcagtcattggtgtcttcctggtttacctgatacttggaatga 25962764  T

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