View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20360_low_9 (Length: 442)
Name: NF20360_low_9
Description: NF20360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20360_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 12546853 - 12547147
Alignment:
| Q |
10 |
tcatcacaatacaagaaaataaaa-gataaattctaaatacttttattcttatcccttttaaggttctaacagtagagagtggcaacttgtgacagctat |
108 |
Q |
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| T |
12546853 |
tcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttttaaggttctaacggtagagagtgacaacttgtgacagctat |
12546952 |
T |
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| Q |
109 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttgattgctctctttggtcttccttctggcccac |
208 |
Q |
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| T |
12546953 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttaatttctctctttggtcttccttctggcccac |
12547052 |
T |
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| Q |
209 |
catttgcattcttgttcactattatttggctgttttcttcctttgacttggtcttctttgtttttgtgatattgggatccatttgctttgtaaca |
303 |
Q |
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| T |
12547053 |
catttgcattcttgttcactattatttggatgttttcttcctttgacttggtcttctttgtttttgtgatattgggatccatttgctttgtaaca |
12547147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 12143984 - 12144257
Alignment:
| Q |
10 |
tcatcacaatacaagaaaataaaa-gataaattctaaatacttttattcttatcccttttaaggttctaacagtagagagtggcaacttgtgacagctat |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
12143984 |
tcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttttaaggttctaacggtagagagtgacaacttgtgacagctat |
12144083 |
T |
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| Q |
109 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttgattgctctctttggtcttccttctggcccac |
208 |
Q |
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| T |
12144084 |
tgaaatttgtcctcttcttaggatgcttctagagactattcctagtccatgagtctgttgggcaatttaatttctctctttggtcttccttctggcccac |
12144183 |
T |
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| Q |
209 |
catttgcattcttgttcactattatttggctgttttcttcctttgacttggtcttctttgtttttgtgatattg |
282 |
Q |
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| T |
12144184 |
catttgcattcttgttcactattatttggatgttttcttcctttgacttggtcttctttgtttttgtgatattg |
12144257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 12143860 - 12143929
Alignment:
| Q |
10 |
tcatcacaatacaagaaaataaaa-gataaattctaaatacttttattcttatcccttttaaggttctaa |
78 |
Q |
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| T |
12143860 |
tcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttttaaggttctaa |
12143929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 1952445 - 1952403
Alignment:
| Q |
384 |
gggtttttgttctgaaggggtcatataatgaatgaattgtagc |
426 |
Q |
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| T |
1952445 |
gggtttttgttctgaagaagtcatataatgaataaattgtagc |
1952403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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