View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20361_high_1 (Length: 423)

Name: NF20361_high_1
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20361_high_1
NF20361_high_1
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-404)||(143069-143472)


Alignment Details
Target: scaffold0001 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 143069 - 143472
Alignment:
Q  1 ggctttgcatccaaacaagagcacctcacaaaatctatttgccttgatgcaaaatattagcagttattagattccattgtttagcgttatgttatggagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143069 ggctttgcatccaaacaagagcacctcacaaaatctatttgccgtgatgcaaaatattagcagttattagattccattgtttagcgttatgttatggagt 143168  T
Q  101 atttggaagaataggaacccgaaaatttggaatgatgtcaactaagttgtcaagtgatttgtaaaagaggatgttctttgttcactacatggcaaatgct 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143169 atttggaaaaataggaacccgaaaatttggaatgatgtcaactaagttgtcaagtgatttgtaaaagaggatgttctttgttcactacatggcaaatgct 143268  T
Q  201 caagaagctaagtataactttaaccatataaatacaatgttgatgcttcattctcccattctctcaatatagttggaattggaattagcatatctaagat 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143269 caagaagctaagtgtaactttaaccatataaatacaatgttgatgcttcattctcccattctctcaatatagttggaattggaattagcatatctaagat 143368  T
Q  301 gttcgggggagttttattctagccaaaactaagtggatttcccctgtgcttgaggttgacacagaccaaagcactgagaatcttatatgctttaaagtgg 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143369 gttcgggggagttttgttctagccaaaactaagtggatttcccctgtgcttgaggttgacacagaccaaagcactgagaatcttatatgctttaaagtgg 143468  T
Q  401 gtga 404  Q
    ||||    
T  143469 gtga 143472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University