View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20361_high_4 (Length: 406)
Name: NF20361_high_4
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20361_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 2675033 - 2675413
Alignment:
| Q |
11 |
cacagatatgtcagacaaaaaataaaatcatgcatctatctcagcatcattatataatactcaagtaatggcaacttgtcaaaattctacaggttggttt |
110 |
Q |
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| T |
2675033 |
cacagatatgtcagacaaaaaataaaatcatgcatctatctcagcatgattatataatactcaagtaatggcaacttgtcaaaattctacaggttggttt |
2675132 |
T |
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| Q |
111 |
ctcatcttaaacttagaaa-ttgcatacaagtttacaaccatccatgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcataca |
209 |
Q |
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| T |
2675133 |
ctcatcttaaacttagaaaattgcatacaagtttacaaccatccatgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcataca |
2675232 |
T |
|
| Q |
210 |
cgactcatgaaacactataaatagtgcatgaaatgaaactcaaaatctcacaacaaaagtagtcgacatatattcaattcataggaagaaagtttctatc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
2675233 |
cgactcatgaaacactataaatagtgcatgaaatgaaactcaaaatctcacaacaaaagtagtctacatatattcaattcataggaagaaagtttgtatc |
2675332 |
T |
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| Q |
310 |
atataagacaaactagtgagtgaagcagttataccatttgaagaagaaagatggcatcccacgatcagagcttcaaagctg |
390 |
Q |
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| T |
2675333 |
atataagacaaactagtgagtgaagcagttataccatttgaagaagaaagatggcatcccaagatcagagcttcaaagctg |
2675413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 27 - 390
Target Start/End: Original strand, 2681371 - 2681724
Alignment:
| Q |
27 |
aaaaaataaaatcatgcatctatctcagcatcattatataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaaacttag |
126 |
Q |
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| T |
2681371 |
aaaaaaaaaaatcatggat--atcttagcatcgttatataataaacaagt---ggcaacttgtcaaaattctagaggctggtttattatcttaaacttat |
2681465 |
T |
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| Q |
127 |
aaattgcatacaagtttacaaccatccatgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatgaaacacta |
226 |
Q |
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|||| |||| ||||||||||||||||||||| | ||||| ||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
2681466 |
aaatggcattcaagtttacaaccatccatggaacgacacgtgttgtggacgtgtcaagaagttggacacgtggttatcatacactacctatgaaacacta |
2681565 |
T |
|
| Q |
227 |
taaatagtgcatgaaatgaaactcaaaatctcacaacaaaagtagtcgacatatattcaattcataggaagaaagtttctatcatataagacaaactagt |
326 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||| | | |||||||| |
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| T |
2681566 |
taaataatgcat-caatgaaactcaaaacctcacaacaaaaatattcgacatatatt--attcataggaagaaagtttctatcat---acataaactagt |
2681659 |
T |
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| Q |
327 |
gagtg-aagcagttataccatttgaagaagaaagatggcatcccacgatcagagcttcaaagctg |
390 |
Q |
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||| || || |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
2681660 |
aggtgaaaccaattataccatttgaagaagaaagatggcatcccacaatcagagctacaaagctg |
2681724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 2666000 - 2666176
Alignment:
| Q |
57 |
tcattatataatactcaagtaatggcaacttgtcaaaattctacaggttggtttctcatcttaaacttagaaattgcatacaagtttacaaccatc--ca |
154 |
Q |
| |
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|||| |||||||| ||||||||| |||||||||||||| || ||||| || || ||||||||||||| | ||| ||| ||||||| ||||||| | |
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| T |
2666000 |
tcatcatataataatcaagtaattgcaacttgtcaaaactccacaggctgattcctcatcttaaact-ataaag-gcactcaagtttgtaaccatcatct |
2666097 |
T |
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| Q |
155 |
tgggatgacacatgttgtgcacgtgtcaagaagttagacacgtggttatcatacacgactcatgaaacactataaatag |
233 |
Q |
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| T |
2666098 |
tagggcaacacgtgttgtaaacgtgtcaagaagttgaatacgtggttatcatacatgactcatgaaatactataaatag |
2666176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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