View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20361_high_6 (Length: 313)
Name: NF20361_high_6
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20361_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 43473360 - 43473646
Alignment:
| Q |
11 |
caaaggctgagggttgtaataagagtagtactttgatatccatgcctggtttgaaacactctgtggtagtgattccttttccttatatcctttctttgtt |
110 |
Q |
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| T |
43473360 |
caaacgctgagggttgtaataagaggagtgctttgatatccatgcctggtttgaaacactctgtggtagtgattctttttccttatatcctttctttgtt |
43473459 |
T |
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| Q |
111 |
gtatcttctttgcctcttacattgtttttctatgttcatgaatcataatactatttccattcaatgtgctagtttggaaggtctacttcagctgttggag |
210 |
Q |
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| T |
43473460 |
gtatcttctttgcctcttacattgtttttctatgttcatgaatcataatactatttccattcaatgtgctagtttggaaggtctacttcagctgttggag |
43473559 |
T |
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| Q |
211 |
tcaccaagagctgcacatttgaggcaccattgtaagtctcaacctatgtagcaccgacatttcaaataaaaggagcattctgtatct |
297 |
Q |
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| T |
43473560 |
tcaccaagagctgcacatttgaggcaccattgtaagtctcaacctatgtagcaccgacatttcaaataaaaggagcattctgtatct |
43473646 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 2081393 - 2081302
Alignment:
| Q |
169 |
attcaatgtgctagtttggaaggtctacttcagctgttggagtcaccaagagctgcacatttgaggcaccattgtaagtctcaacctatgta |
260 |
Q |
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|||| ||||||||||||||||||||||||| || ||||| | | |||||||| ||||| ||||||| | |||||||| ||||| ||||| |
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| T |
2081393 |
attctatgtgctagtttggaaggtctactttagttgttgcattaaccaagagtcacacatctgaggcatccatgtaagtcccaacccatgta |
2081302 |
T |
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