View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20361_low_1 (Length: 423)

Name: NF20361_low_1
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20361_low_1
NF20361_low_1
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-404)||(143069-143472)


Alignment Details
Target: scaffold0001 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 143069 - 143472
Alignment:
Q  1 ggctttgcatccaaacaagagcacctcacaaaatctatttgccttgatgcaaaatattagcagttattagattccattgtttagcgttatgttatggagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143069 ggctttgcatccaaacaagagcacctcacaaaatctatttgccgtgatgcaaaatattagcagttattagattccattgtttagcgttatgttatggagt 143168  T
Q  101 atttggaagaataggaacccgaaaatttggaatgatgtcaactaagttgtcaagtgatttgtaaaagaggatgttctttgttcactacatggcaaatgct 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143169 atttggaaaaataggaacccgaaaatttggaatgatgtcaactaagttgtcaagtgatttgtaaaagaggatgttctttgttcactacatggcaaatgct 143268  T
Q  201 caagaagctaagtataactttaaccatataaatacaatgttgatgcttcattctcccattctctcaatatagttggaattggaattagcatatctaagat 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143269 caagaagctaagtgtaactttaaccatataaatacaatgttgatgcttcattctcccattctctcaatatagttggaattggaattagcatatctaagat 143368  T
Q  301 gttcgggggagttttattctagccaaaactaagtggatttcccctgtgcttgaggttgacacagaccaaagcactgagaatcttatatgctttaaagtgg 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  143369 gttcgggggagttttgttctagccaaaactaagtggatttcccctgtgcttgaggttgacacagaccaaagcactgagaatcttatatgctttaaagtgg 143468  T
Q  401 gtga 404  Q
    ||||    
T  143469 gtga 143472  T

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