View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20361_low_10 (Length: 205)
Name: NF20361_low_10
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20361_low_10 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1685449 - 1685242
Alignment:
| Q |
1 |
acgaaagaatcaaccttagtataccagctatatttagatcaacgatgagtttgac-atgatctaattttggaaaaactgatttttagaagtttcaataaa |
99 |
Q |
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| T |
1685449 |
acgaaagaatcaacctaagtataccagctatatttagatcaacgatgagtttgaatataatctaatttcggaaaaactgatttttagaagtttcaataaa |
1685350 |
T |
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| Q |
100 |
attaaataaggatgtcactgtggtttcatcaaactcatcctgannnnnnnaaagataaacttcaaaa--atacacttacactaatagttttcaaagcttc |
197 |
Q |
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| T |
1685349 |
attaaataacaatgtcacagtgatttcatcaaactcatcctgatttttttaaagataaacttcaaaaacatacacttacactattagtcttaaaagcttc |
1685250 |
T |
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| Q |
198 |
aataaaat |
205 |
Q |
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|||||||| |
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| T |
1685249 |
aataaaat |
1685242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 1695979 - 1695925
Alignment:
| Q |
3 |
gaaagaatcaaccttagtataccagctatatttagatcaacgatgagtttgacat |
57 |
Q |
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| T |
1695979 |
gaaagaatcaaccttagtatacctgctatatttagatcaacgatgagtctgacat |
1695925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 1695812 - 1695774
Alignment:
| Q |
167 |
atacacttacactaatagttttcaaagcttcaataaaat |
205 |
Q |
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| T |
1695812 |
atacacttacactattagttttcaaagcttcaataaaat |
1695774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 1695852 - 1695814
Alignment:
| Q |
60 |
tctaattttggaaaaactgatttttagaagtttcaataa |
98 |
Q |
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| T |
1695852 |
tctaatttgggtaaaactgatttttagaagtttcaataa |
1695814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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