View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20361_low_2 (Length: 417)
Name: NF20361_low_2
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20361_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29274164 - 29274326
Alignment:
| Q |
1 |
tatagaatatggatgagtaggtgtatgttattgttggcctcagtatatatataaattgcaagtgtgaacttcgttaccttttctcctccgtgtgacttgt |
100 |
Q |
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| T |
29274164 |
tatagaatatggatgagtaggtgtatgttattgttggcctcagtatatatataaattgcaagtgtgaacttcgttaccttttctcctccgtgtgacttgt |
29274263 |
T |
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| Q |
101 |
gtgaagtctgttaaaatataataaaaaagaagccaattttaacaactctctatcacacattaa |
163 |
Q |
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| T |
29274264 |
gtgaagtctgttaaaatataataaaaaagaagccaattttaacaactctctatcacacattaa |
29274326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 41 - 389
Target Start/End: Original strand, 268801 - 269152
Alignment:
| Q |
41 |
cagtatatatataaattgcaag-tgtgaacttcgttaccttttctcctccgtgtgacttgtgtgaagtctgttaaaatataataaaaaagaagccaattt |
139 |
Q |
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| T |
268801 |
cagtatatataaaaattgcaatctatgaacttcgttaccttttcgcctccgtgtgacttgtgtcgagtctgttaaaatataataaaaaaaaa-ccaattt |
268899 |
T |
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| Q |
140 |
taacaactctctatcacacattaatataataattgtctcacactctaagcg----gacaggaagtagatgccgacgtttaataattattt-atgggtgtt |
234 |
Q |
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| T |
268900 |
taacaactctctgtcacacattaatataataattgtctcactctctaagcgtagggacaggaagtagatgccgacgttgaataattattttataggtgtt |
268999 |
T |
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| Q |
235 |
gtttatttactatgaaacaatattgacggtgtgatgattgatataatatacagatcaaaagtaaatgttaatgttagttaatcataaactattt-cataa |
333 |
Q |
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| T |
269000 |
gtttattttctatgaaacaatattgaaggtgtgataattgatacaatatacatatcaaaagtaa-------tggtagttaatcataaactattttcataa |
269092 |
T |
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| Q |
334 |
gacnnnnnnnn----gttgtttcataggaaccctttcacccaaagtaattctattttagt |
389 |
Q |
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| T |
269093 |
gactttttttttgttgttgttttataggaaccctatcgccgaaagtaattctattttagt |
269152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 268740 - 269095
Alignment:
| Q |
1 |
tatagaatatggatgagtaggtgtatgttattgttggcct---------------------cagtatatatataaattgcaa-gtgtgaacttcgttacc |
78 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| | |||||||||||||| |
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| T |
268740 |
tatagaatatggatgagtaggtgtatactattgttggcctctgtaatataaaactatgtaacagtatatataaaaattgcaatctatgaacttcgttacc |
268839 |
T |
|
| Q |
79 |
ttttctcctccgtgtgacttgtgtgaagtctgttaaaatataataaaaaagaagccaattttaacaactctctatcacacattaatataataattgtctc |
178 |
Q |
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| T |
268840 |
ttttcgcctccgtgtgacttgtgtcgagtctgttaaaatataataaaaaa-aaaccaattttaacaactctctgtcacacattaatataataattgtctc |
268938 |
T |
|
| Q |
179 |
acactctaagc----ggacaggaagtagatgccgacgtttaataatta-tttatgggtgttgtttatttactatgaaacaatattgacggtgtgatgatt |
273 |
Q |
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|| |||||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||| |
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| T |
268939 |
actctctaagcgtagggacaggaagtagatgccgacgttgaataattattttataggtgttgtttattttctatgaaacaatattgaaggtgtgataatt |
269038 |
T |
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| Q |
274 |
gatataatatacagatcaaaagtaaatgttaatgttagttaatcataaacta-tttcataagac |
336 |
Q |
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|||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
269039 |
gatacaatatacatatcaaaag-------taatggtagttaatcataaactattttcataagac |
269095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 26646259 - 26646116
Alignment:
| Q |
4 |
agaatatggatgagtaggtgtatgttattgttggcctcagtatatatataaattgcaagtgtgaacttcgttacc-ttttctcctccgtgtgacttgtgt |
102 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| ||| ||||| | | || | |||||| ||||| |||||||||||| ||| ||||||| |
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| T |
26646259 |
agaatatggatgagttggtgtatgttattgttggcctctgta-atataacact---aaata-gaactttcttaccattttctcctccgcgtggcttgtgt |
26646165 |
T |
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| Q |
103 |
gaagtctgttaaaatataa-taaaaaagaagccaattttaacaactctc |
150 |
Q |
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| T |
26646164 |
ccagtctgttaaaatataactaaataacaagccaattttaacaactctc |
26646116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 26752227 - 26752084
Alignment:
| Q |
4 |
agaatatggatgagtaggtgtatgttattgttggcctcagtatatatataaattgcaagtgtgaacttcgttacc-ttttctcctccgtgtgacttgtgt |
102 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| ||| ||||| | | || | |||||| ||||| |||||||||||| ||| ||||||| |
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| T |
26752227 |
agaatatggatgagttggtgtatgttattgttggcctctgta-atataacact---aaata-gaactttcttaccattttctcctccgcgtggcttgtgt |
26752133 |
T |
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| Q |
103 |
gaagtctgttaaaatataa-taaaaaagaagccaattttaacaactctc |
150 |
Q |
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| T |
26752132 |
ccagtctgttaaaatataactaaataacaagccaattttaacaactctc |
26752084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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