View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20361_low_3 (Length: 411)
Name: NF20361_low_3
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20361_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 46428697 - 46429020
Alignment:
| Q |
1 |
cctatgtgtttgattgtgacaccatgcgtattgttaaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttttaaataaa |
100 |
Q |
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| T |
46428697 |
cctatgtgtttgattgtgacaccatgcgtattgttaaggcaagttcttctggaaatcttaactaagttt--gtggccttaagcattgctttttaaataaa |
46428794 |
T |
|
| Q |
101 |
tttcaatttaaattccttcaatttggtttctttgtgcacatttgaattccttaaatatcaatttctaaaccaacaggagggctatctcaatgaagaaccc |
200 |
Q |
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| T |
46428795 |
tttcaatttgaattccttcaatttggtttctttgtgcacatttgaattccttaaatatcaatttctaaaccaacaggagggctatctcaatgaagaaccc |
46428894 |
T |
|
| Q |
201 |
tcgtgcgagaatgctttactggagaagaaagagttggaggctgatggtgatgtggctacacgagttgatgaaataagtgggtagataggttaagtattgt |
300 |
Q |
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| T |
46428895 |
tcgtgcgagaatgctttactggagaagaaagagttggaggctgatggtgatgtggctacacgagttgatgaaataagtgggtagataggttaagtattgt |
46428994 |
T |
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| Q |
301 |
caatctgttacctaactcaaatttgc |
326 |
Q |
| |
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| T |
46428995 |
caatctgttacctaactcaaatttgc |
46429020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 46441556 - 46441669
Alignment:
| Q |
282 |
tagataggttaagtattgtcaatctgtta-cctaactcaaatttgcggtaagaa--tttgctttaaaattggtaatctaattagaggctgagaatcatat |
378 |
Q |
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| T |
46441556 |
tagataggttaagtattgtcaatcagtcaacctaactcaattttgcggtaagaaaatttgctttaaaattggtaatctaattggaggttgagaatcattt |
46441655 |
T |
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| Q |
379 |
tccagttgattgct |
392 |
Q |
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| T |
46441656 |
tccagttgattgct |
46441669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 46021819 - 46021884
Alignment:
| Q |
34 |
ttaaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttttaaataa |
99 |
Q |
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| T |
46021819 |
ttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgctttttaaataa |
46021884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 46245773 - 46245708
Alignment:
| Q |
34 |
ttaaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttttaaataa |
99 |
Q |
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| T |
46245773 |
ttaaggcaagttcttctggaaatcttaactatgtttatgaggcctttagcattgcttttgaaataa |
46245708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 46303583 - 46303526
Alignment:
| Q |
35 |
taaggcaagttcttctggaaatcttaactaagtttatgtggccttaagcattgctttt |
92 |
Q |
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| T |
46303583 |
taagggaagttcttctggaaatctcaactaagttaatgtggcctttatcattgctttt |
46303526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 46303032 - 46302953
Alignment:
| Q |
205 |
gcgagaatgctttactggagaagaaagagttggaggc------tgatggtgatgtggctacacgagttgatgaaataagt |
278 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||||| |||| |||||||||||| | ||||||||||||||||| |
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| T |
46303032 |
gcgataatgctttacaggagaaggaagagttggaggctgatattgatagtgatgtggctaaatgagttgatgaaataagt |
46302953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 46022006 - 46022044
Alignment:
| Q |
207 |
gagaatgctttactggagaagaaagagttggaggctgat |
245 |
Q |
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| T |
46022006 |
gagaatgctttaccggagaaggaagagttggaggctgat |
46022044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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