View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20361_low_5 (Length: 348)
Name: NF20361_low_5
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20361_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 32139584 - 32139273
Alignment:
| Q |
21 |
atagaaaactaaaattgtcatgtttgaccaaagaaatcaatgtggtgtccagataatataaacaaggcaacatcatgtagtcgtgttagatacaaagaaa |
120 |
Q |
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| T |
32139584 |
atagaaaactgaaattgtcatgtttgaccaaagaaatcaatgtggtgtccagataatataaacaaggcaacatcatgtagtcgtgttagatacaaagaaa |
32139485 |
T |
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| Q |
121 |
cgtggcattggcattgttaacatctcaaattgtttttgacttaaa-gcgccaacttctttaatacactatgaaccaaatcaaatgtggcaactcgatcaa |
219 |
Q |
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| T |
32139484 |
cgtggcattg------ttaacatctcaaattgtttttgacttaaaagcaccaacttctttaatacactatgaaccaaatcaaatgtggcaactcgatcaa |
32139391 |
T |
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| Q |
220 |
tataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactcaagccatggctaattccaattttcaacacttca |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32139390 |
tataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactctagccatggctaattccaattttcaacacttca |
32139291 |
T |
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| Q |
320 |
ttacaatccttctcctat |
337 |
Q |
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|||||||||||||||||| |
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| T |
32139290 |
ttacaatccttctcctat |
32139273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 32148786 - 32148663
Alignment:
| Q |
223 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactcaagccatggctaattccaattttcaac |
313 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| |||||||||||||||| | |||||| |||| |
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| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
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| Q |
314 |
acttcattacaatccttctcctat |
337 |
Q |
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|||||||||||| ||| ||||||| |
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| T |
32148686 |
acttcattacaaccctcctcctat |
32148663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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