View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20361_low_7 (Length: 293)

Name: NF20361_low_7
Description: NF20361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20361_low_7
NF20361_low_7
[»] chr5 (3 HSPs)
chr5 (48-274)||(14274740-14274966)
chr5 (60-159)||(39173529-39173628)
chr5 (125-179)||(10813151-10813205)
[»] chr3 (5 HSPs)
chr3 (49-274)||(51140100-51140325)
chr3 (48-206)||(40927306-40927464)
chr3 (125-172)||(52964156-52964203)
chr3 (125-172)||(54548333-54548380)
chr3 (125-166)||(38475645-38475686)
[»] chr6 (2 HSPs)
chr6 (60-256)||(21729772-21729965)
chr6 (60-256)||(14453346-14453538)
[»] chr1 (5 HSPs)
chr1 (60-209)||(14650984-14651130)
chr1 (60-209)||(14660775-14660921)
chr1 (125-172)||(28037673-28037720)
chr1 (125-179)||(33978188-33978242)
chr1 (126-179)||(27643376-27643429)
[»] chr2 (3 HSPs)
chr2 (62-256)||(8323479-8323670)
chr2 (122-179)||(4244400-4244457)
chr2 (125-205)||(36756962-36757042)
[»] scaffold0996 (1 HSPs)
scaffold0996 (125-206)||(1554-1635)
[»] chr4 (3 HSPs)
chr4 (125-178)||(5185486-5185539)
chr4 (125-182)||(38761390-38761447)
chr4 (125-204)||(54421415-54421494)
[»] chr8 (2 HSPs)
chr8 (126-206)||(11629494-11629574)
chr8 (126-179)||(16484161-16484214)
[»] chr7 (2 HSPs)
chr7 (127-206)||(513846-513925)
chr7 (125-177)||(27745736-27745788)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 274
Target Start/End: Original strand, 14274740 - 14274966
Alignment:
Q  48 gagtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctc 147  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  14274740 gagtaaaattaaaattaatacatttcattaataattatagagtacaaatcatgtggtacaatataatagatatgagaactaggatgagataaggatgctc 14274839  T
Q  148 tagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtc 247  Q
    || |||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14274840 taactatcctatgtgcaactctatttgcttgctttcgaatgaacgacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggcc 14274939  T
Q  248 cccgagctcagtgtggatggttgaaga 274  Q
    |||||||||| ||||||| ||||||||    
T  14274940 cccgagctcattgtggattgttgaaga 14274966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 39173529 - 39173628
Alignment:
Q  60 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 159  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||| ||  |||||||||||||||||||||| ||||||| ||||    
T  39173529 aattaatgcatttcattaataattatagagtacacatcatgtggaacaatataaaagatatgaaggctaggatgagataaggatgctttagctatgctat 39173628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 10813151 - 10813205
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 179  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  10813151 gctaggatgagataaggaagctctagctatactatgagcaaccctattagcttgc 10813205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 274
Target Start/End: Original strand, 51140100 - 51140325
Alignment:
Q  49 agtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctct 148  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| ||||| || || ||||||| ||||| | | |||||||||  |||||||||||||    
T  51140100 agtaaaagcagaattaatgcatttcattaataattatagagtacagatcatctgatacaatataaaagatatgggggctaggatggcataaggatgctct 51140199  T
Q  149 agctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtcc 248  Q
    |||||| ||||||||||||||||| |||||||||| ||| ||| |||||| ||||||||| ||||| ||||||||||||||||||||| ||| |||||||    
T  51140200 agctatgctatgtgcaaccctattcgcttgcttccgaataaacgacactataaagtcgaagttggtagccaagagacccctacactgaactagcaggtcc 51140299  T
Q  249 ccgagctcagtgtggatggttgaaga 274  Q
    ||||||||| |||||| || ||||||    
T  51140300 ccgagctcattgtggaaggatgaaga 51140325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 40927306 - 40927464
Alignment:
Q  48 gagtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctc 147  Q
    |||||||| || | ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| | ||| | | | |||||||| ||||||||||||    
T  40927306 gagtaaaagcatagttaatgcatttcattaataattatagagtacagatcatctggtacaatataaaaaatatgggggataggatgacataaggatgctc 40927405  T
Q  148 tagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 206  Q
    ||| ||| |||| ||||||||||||||||||| | | ||| ||| ||||||||||||||    
T  40927406 tagttatgctatatgcaaccctatttgcttgccttcgaataaacgacactacaaagtcg 40927464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 52964156 - 52964203
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 172  Q
    |||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  52964156 gctaggatgagataaggaagatctagctatactatgagcaaccctatt 52964203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 54548333 - 54548380
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 172  Q
    |||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  54548333 gctaggatgagataaggaagctctagctatactatgagcaactctatt 54548380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 38475686 - 38475645
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaac 166  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  38475686 gctagggtgagataaggatgctctagttatactatgtgcaac 38475645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 21729772 - 21729965
Alignment:
Q  60 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 159  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | |||||||||||||||||||| | ||||||| ||||    
T  21729772 aattaatgcatttcattaataattatagagtacacatcatgtggtacaatataaaagatatgggggctaggatgagataaggatgttgtagctatgctat 21729871  T
Q  160 gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtccccgagctc 256  Q
    |||||||| |||||| |||| ||| ||||||| |||||||||||||||||   || | |||||| ||||||| |||| ||| ||||||||| |||||    
T  21729872 gtgcaaccttatttggttgcctccgaatgaacgacactacaaagtcgaaa---gtagacaagaggcccctactctgaactagcaggtccccaagctc 21729965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 14453346 - 14453538
Alignment:
Q  60 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcc--- 156  Q
    ||||||||||||||||||||||     ||||||| |||||||| || ||||||| ||||| | | |||||||||||||||||||||||||||||| |       
T  14453346 aattaatacatttcattaataa-----gagtacacatcatgtgttacaatataaaagatatgggggctaggatgagataaggatgctctagctatactat 14453440  T
Q  157 -tatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtccccgagct 255  Q
     ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||   || ||||||||  ||||||||||| ||| ||||||||| ||||    
T  14453441 atatgtgcaaccttatttgcttgcctccgaatgaacaacactacaaagtcgaaa---gtagccaagagggccctacactgaactagcaggtccccaagct 14453537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 14651130 - 14650984
Alignment:
Q  60 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 159  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | ||||||||||||||   ||||||||||||| ||||    
T  14651130 aattaatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatgggggctaggatgagata---atgctctagctatgctat 14651034  T
Q  160 gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaa 209  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||||||||||    
T  14651033 gtgcaaccttatttgcttgcctccgaatgaacgacactacaaagtcgaaa 14650984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 14660921 - 14660775
Alignment:
Q  60 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 159  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | ||||||||||||||   ||||||||||||| ||||    
T  14660921 aattaatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatgggggctaggatgagata---atgctctagctatgctat 14660825  T
Q  160 gtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaa 209  Q
    |||||||| ||||||||||| ||| ||||||| |||||||||||||||||    
T  14660824 gtgcaaccttatttgcttgcctccgaatgaacgacactacaaagtcgaaa 14660775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 28037720 - 28037673
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 172  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||    
T  28037720 gctaggatgagataaagaagctctagctatactatgagcaaccctatt 28037673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 33978188 - 33978242
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 179  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||||||| ||||||    
T  33978188 gctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgc 33978242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 27643376 - 27643429
Alignment:
Q  126 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 179  Q
    ||||| |||||||||||||||||||| || ||||| |||||| |||| ||||||    
T  27643376 ctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgc 27643429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 256
Target Start/End: Original strand, 8323479 - 8323670
Alignment:
Q  62 ttaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctatgt 161  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| | | ||||| ||||| | | | |||||||||||||||||||||||| ||| ||||||    
T  8323479 ttaatccatttcattaataattatagcgtacacatcatgtggaacattataaaagatatgggggttaggatgagataaggatgctctagttatgctatgt 8323578  T
Q  162 gcaaccctatttgcttgcttcccaatgaacaacactacaaagtcgaaattggttgccaagagacccctacactgagctatcaggtccccgagctc 256  Q
    |||||  |||||| |||  | | ||||||| | |||||||||||||||   ||  |||||||||||||||||||| ||| ||||||||| |||||    
T  8323579 gcaactttatttgtttgtcttcgaatgaacgatactacaaagtcgaaa---gtaaccaagagacccctacactgaactagcaggtccccaagctc 8323670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 4244457 - 4244400
Alignment:
Q  122 agagctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 179  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| | ||||||||||||    
T  4244457 agagctaggatgagataaagatgctctagctatactatgagcagctctatttgcttgc 4244400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 36756962 - 36757042
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtc 205  Q
    ||||||||| |||||||| |||||||| || ||||| |||||  |||| |||||| ||| ||| ||| |||||||||||||    
T  36756962 gctaggatgtgataaggaagctctagcaatactatgagcaactttattagcttgcctccgaataaacgacactacaaagtc 36757042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 1554 - 1635
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 206  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||||||| |||||| ||| ||   || ||||||||||||||    
T  1554 gctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgcctccgaacatacgacactacaaagtcg 1635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 5185486 - 5185539
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttg 178  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||||||||| |||||    
T  5185486 gctaagatgagataaggaagctctagctatactatgagcaaccctattagcttg 5185539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 38761390 - 38761447
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttc 182  Q
    |||||| |||||||||||||||||||| || ||||| |||||| |||| |||||||||    
T  38761390 gctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgcttc 38761447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 54421415 - 54421494
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagt 204  Q
    ||||||||| |||||||| |||||||| || |||||  ||||| |||| |||||| ||| ||| ||| ||||||||||||    
T  54421415 gctaggatgtgataaggaagctctagcaatactatgaccaaccttattagcttgcctccgaataaacgacactacaaagt 54421494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 11629574 - 11629494
Alignment:
Q  126 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 206  Q
    ||||| |||||||| ||||||||||| || ||||| ||||| |||||||||||| ||| ||   || ||||||||||||||    
T  11629574 ctagggtgagataatgatgctctagcaatactatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcg 11629494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 16484161 - 16484214
Alignment:
Q  126 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 179  Q
    ||||| |||||||||||||||||||| || ||||| |||||| |||| ||||||    
T  16484161 ctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgc 16484214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 513925 - 513846
Alignment:
Q  127 taggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttcccaatgaacaacactacaaagtcg 206  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||| |||||| ||| ||   || ||||||||||||||    
T  513925 taggatgacataaggaagctctagcaatactatgagcaaccctattagcttgcctccaaacatacgacactacaaagtcg 513846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 27745736 - 27745788
Alignment:
Q  125 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgctt 177  Q
    |||||| |||||||||||||||||||| || ||||| |||||| |||| ||||    
T  27745736 gctagggtgagataaggatgctctagcgatactatgagcaaccttattagctt 27745788  T

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