View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_10 (Length: 477)
Name: NF20362_high_10
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 31038816 - 31038462
Alignment:
| Q |
1 |
gctgttgccttgctccaaatttaccagtttgtcgtgtagatcattgctgctacgagactgcaactcacccgctggctgagttcaagggaagcttttactt |
100 |
Q |
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| T |
31038816 |
gctgttgccttgctgcaaatttaccagtttgtcgtgtagatcattgctgctacgagactgcaactcacccgctggctgagttcaagggaagcttttactt |
31038717 |
T |
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| Q |
101 |
tcattgtatgatattttgcgagtttaaatcttaggaaatgatgatttggttattacatcatttgtattttattcaattacatatattttctagcgtattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
31038716 |
tcattgtatgatattttgcgagtttaaatcttagcaaattatgatttggttattacattatttgtattttattcaattacagatattttctagcgtattt |
31038617 |
T |
|
| Q |
201 |
attttaatgtagtgagaatgatttgtctatgttttttgtttgcttgatgagaaatttacaaatttacatgcatcaatgataaaacatcatgtttaattca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31038616 |
attttaatgtagtgagaatgatttgtctatgttttttgtttgcttgatgagaaatttacaaatttacatgcatcaatgataaaacatcatgtttaattca |
31038517 |
T |
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| Q |
301 |
ttcatgcttcttaaaagagattgagttcatgtttggttatatgtaaagtgattta |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31038516 |
ttcatgcttcttaaaagagattgagttcatgtttggttacatgtaaagtgattta |
31038462 |
T |
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