View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20362_high_11 (Length: 471)
Name: NF20362_high_11
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_11 |
 | |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
| [»] scaffold0958 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 37)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 7587340 - 7587782
Alignment:
| Q |
17 |
aatcccttgatcttagaaatttgattcaataatctcttacaatctttcacatcaagatcgcaacaaatgtgacgtgttctttcagttatatcttgcagac |
116 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
7587340 |
aatcccttgaacatagaaatgtgattcaataatctctcacattctttcacatcaagatcgcaacaaatgtgacgtgttctttcagttatgtattgaagac |
7587439 |
T |
|
| Q |
117 |
tatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagatcatgcatgacaaaacttttatcaccccatgaatatag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| | ||| ||| |
|
|
| T |
7587440 |
tatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagatcatgcatgaataatctcttatcaccaaaataatctag |
7587539 |
T |
|
| Q |
217 |
tggttcttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttct |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7587540 |
tggttgttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttct |
7587639 |
T |
|
| Q |
317 |
gccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7587640 |
gccatccaaagcttgatcaattcatctttttcaaatacataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggatgggagattat |
7587739 |
T |
|
| Q |
417 |
ggtaactcaatctcaatactgagttaatttcatcaccaccctt |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7587740 |
ggtaactcaatctcaatactgagttaatttcatcaccaccctt |
7587782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 58 - 444
Target Start/End: Original strand, 8471076 - 8471456
Alignment:
| Q |
58 |
atctttcacatcaagatcgcaacaaatgtgacgtgttctttcagttatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggactctgat |
157 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8471076 |
atctttcaaatcaagataacagcaaatgtgacgtgttctttcagatatatcttgcacactatcaccctcaatttgtaagcaaaactcttgggactctgat |
8471175 |
T |
|
| Q |
158 |
tttgccaaatcattgacaagatcatgcatgacaaaacttttatcaccccatgaatatagtggttcttgaaaaaatgaaatggactctagatcatccaaga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| |||| | | | ||||| || ||| | ||||||||||||||| |||||||| |||| |
|
|
| T |
8471176 |
tttgccaaatcattgacaagatcatgcatgactatactcttatgatct------tctagtgattgttggagaaatgaaatggactcaagatcatcaaaga |
8471269 |
T |
|
| Q |
258 |
attcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcata |
357 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| | |
|
|
| T |
8471270 |
attcattacccaactcttcctcacttttgtctcttctgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaaa |
8471369 |
T |
|
| Q |
358 |
acccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
444 |
Q |
| |
|
|||||| |||||||| || || |||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
8471370 |
acccttaggaaatatagagcagtaggcaaaacagcgcttcagattagaagggaggttatggtaactcaatctcaatgccgagttaat |
8471456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 227 - 459
Target Start/End: Complemental strand, 8569299 - 8569067
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
8569299 |
aaaaatgaaatggactccagatcatcgaagaactcattacccagctcttcttcacttttgtctcttttgcaacacttcaacaaaccttctgccatccaaa |
8569200 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8569199 |
gcttgatcaattcatctttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaa |
8569100 |
T |
|
| Q |
427 |
tctcaatactgagttaatttcatcaccaccctt |
459 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |
|
|
| T |
8569099 |
tctcaatactgggttaatttcatcgtcaccctt |
8569067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 58 - 432
Target Start/End: Complemental strand, 6839424 - 6839053
Alignment:
| Q |
58 |
atctttcacatcaagatcgcaacaaatgtgacgtgttctttcagttatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggactctgat |
157 |
Q |
| |
|
|||||| | |||||||| ||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| |
|
|
| T |
6839424 |
atctttgaaatcaagattgcaccgaatgtgacgtgttctttcagttatatcttgcagattatcactctcaatttgtaagcaaaactcttgggactcagat |
6839325 |
T |
|
| Q |
158 |
tttgccaaatcattgacaagatcatgcatgacaaaacttttatcaccc-catgaatatagtggttcttgaaaaaatgaaatggactctagatcatccaag |
256 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||| || ||| ||| | | || | |||| |||||||||||||||||||| | ||||| | |
|
|
| T |
6839324 |
tttgccaaatcattaacaagatcatgcatgagaaatcttgtacgaccatcat-agtttaattgttcg---aaaaatgaaatggactctaggtaatccatg |
6839229 |
T |
|
| Q |
257 |
aattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcat |
356 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
6839228 |
aattcatttcccaattcttcttcacttttgtctcttccgcagtatttcagcaaaccttctgccatccaaagcttgatcaattcatccctgtcaaactcaa |
6839129 |
T |
|
| Q |
357 |
aacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaa |
432 |
Q |
| |
|
||||| | ||||||| ||||| |||||||||| || || | | |||||||||| |||||||||||||||||||| |
|
|
| T |
6839128 |
aacccctaggaaatacagaacagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaa |
6839053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 227 - 444
Target Start/End: Complemental strand, 6520516 - 6520299
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| | || | ||||||||| || ||||||||||||||||| |||| |||| |||| |||||||||||||||||||| |
|
|
| T |
6520516 |
aaaaatgaaattgactcaagatcaccgaaaatttcattaccaaaatcttcttcacttttgtccaatccgtaacacttcaacaaaccttctgccatccaaa |
6520417 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6520416 |
gcttgatcaatttatcttttttaaatttataacccttgggaaaaatagaacaatatgcaaaacaacgctttagattggaagggagattatggtaactcaa |
6520317 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6520316 |
tctcaatactgagttaat |
6520299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 227 - 444
Target Start/End: Complemental strand, 6554792 - 6554575
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| | || | ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6554792 |
aaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaa |
6554693 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||||||| | |||||||||||| ||| |||||||| || || |||||| | ||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6554692 |
gcttgatcaatacttctttttcaaatctatagcccttggggaaaatggaacaatacgcaaagcaacgctttagatccgaagggagattatggtaactcaa |
6554593 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
6554592 |
tcttagtactgagttaat |
6554575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 227 - 431
Target Start/End: Complemental strand, 6480336 - 6480132
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| | || | ||||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
6480336 |
aaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtatgatccgcaacacttcaacaaaccttctgccatccaaa |
6480237 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || || ||||| |||||||| ||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
6480236 |
gcttgatcaattcatctttttcaaatgtataacccttggggaaaatggaacagaaggcaaagcaacgcttttgatcggaagggagattgtggtaactcaa |
6480137 |
T |
|
| Q |
427 |
tctca |
431 |
Q |
| |
|
||||| |
|
|
| T |
6480136 |
tctca |
6480132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 6795172 - 6795000
Alignment:
| Q |
17 |
aatcccttgatcttagaaatttgattcaataatctcttacaatctttcacatcaagatcgcaacaaatgtgacgtgttctttcagttatatcttgcagac |
116 |
Q |
| |
|
|||||||| || |||||||| |||||||||| |||| || ||||| | |||||||| ||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
6795172 |
aatcccttaatattagaaatgtgattcaatactctcgcaccatcttcccaatcaagatagcaacaaatatgacgtgttctttcaattatatcttgcagac |
6795073 |
T |
|
| Q |
117 |
tatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagatcatgcatgac |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6795072 |
tatcaccctcaatttgtaagcaaaactcatgggacactgattttgccaaatcattgacaagatcatgcatgac |
6795000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 259 - 431
Target Start/End: Original strand, 6946976 - 6947148
Alignment:
| Q |
259 |
ttcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataa |
358 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6946976 |
ttcattacctaactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataa |
6947075 |
T |
|
| Q |
359 |
cccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
431 |
Q |
| |
|
||||||||||| || || ||| |||||||||||||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
6947076 |
cccttgggaaaaatggagcaataggcaaaacaacgcttccgattggaaggaagattgtggtaactcaatctca |
6947148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 227 - 444
Target Start/End: Original strand, 6735665 - 6735882
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| | || | |||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6735665 |
aaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaa |
6735764 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||||||| | ||||||| |||| |||||||||||| || || |||||| ||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
6735765 |
gcttgatcaatacttcttttttaaatctataacccttggggaaaatggaacaataggcaaagcaacgctttagatctgatgggagattatggtaactcaa |
6735864 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
6735865 |
tcttagtactgagttaat |
6735882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 227 - 441
Target Start/End: Original strand, 8589404 - 8589618
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| | || | ||||||||| ||||||||||||||||||| | ||||||||| |||| ||||||||||||||||| | |
|
|
| T |
8589404 |
aaaaatgaaattgactcaagatcaccgaaaatttcattacctaactcttcttcacttttgtgtgatccgcaacacttcaataaaccttctgccatccaga |
8589503 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| || |||||| | | ||| ||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
8589504 |
gcttgatcaattcacctttttcaaattcataacccttgggaaaaatggaacaataagaaaagcaatgctttagaatggaagggagattatggtaacttaa |
8589603 |
T |
|
| Q |
427 |
tctcaatactgagtt |
441 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
8589604 |
tctcagaactgagtt |
8589618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 227 - 444
Target Start/End: Complemental strand, 6449141 - 6448924
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| || | ||||||||| ||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||| |
|
|
| T |
6449141 |
aaaaatgaaattgactcaagatcacagaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcaacataccttctgccatccaaa |
6449042 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||| || || || || ||| ||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
6449041 |
gcttgatcaattcatcctttttaaatctataacccttagggaaaatggagcaataggcaaagcaacactttagactggaagggagattatggtaactcaa |
6448942 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
6448941 |
tctcagtactgagttaat |
6448924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 227 - 431
Target Start/End: Original strand, 6916804 - 6917008
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
|||||||| || ||| ||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
6916804 |
aaaaatgatattgacactagatcattgaaaaattcattacccaactcttcttcacttttgtctcttccacaacacttcagcaaaccttctgccatccaaa |
6916903 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||| |||||| | || ||||| ||||| |||||||||||||| ||||| | ||||||||| |||| ||||| |||| ||||||| ||||||||| |
|
|
| T |
6916904 |
gcttgattaattcacccttctcaaactcatagcccttgggaaatatggaacagtaagcaaaacaatgcttcagatttgaagagagattaaggtaactcat |
6917003 |
T |
|
| Q |
427 |
tctca |
431 |
Q |
| |
|
||||| |
|
|
| T |
6917004 |
tctca |
6917008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 227 - 424
Target Start/End: Original strand, 6168594 - 6168791
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
|||||||| || ||| |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||| ||||||||||| |
|
|
| T |
6168594 |
aaaaatgacattgacactagatgatcaaagaattcattacccaactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtgccatccaaa |
6168693 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactc |
424 |
Q |
| |
|
||||||| ||| |||| |||||||| | |||||||||||||||||| |||||| | ||||||||| |||| ||||| |||||||| ||| |||||||| |
|
|
| T |
6168694 |
gcttgattaatccatccttttcaaacttataacccttgggaaatatagaacaatatgcaaaacaatgcttcagatttgaagggaggttaaggtaactc |
6168791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 254 - 434
Target Start/End: Original strand, 6899818 - 6899998
Alignment:
| Q |
254 |
aagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| | || ||||| | |
|
|
| T |
6899818 |
aagaattcattacccaactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacccttctcaaact |
6899917 |
T |
|
| Q |
354 |
cataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaata |
434 |
Q |
| |
|
|||| ||||| ||||||| |||||| | |||||||| |||| |||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
6899918 |
catagccctttggaaataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactcaatttcaata |
6899998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 259 - 443
Target Start/End: Original strand, 8454361 - 8454545
Alignment:
| Q |
259 |
ttcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataa |
358 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||| ||||| || | |
|
|
| T |
8454361 |
ttcattaccaaactcttcttcacttctgttagatccgcaacacttcaacaaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatga |
8454460 |
T |
|
| Q |
359 |
cccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaa |
443 |
Q |
| |
|
||||||||||| || |||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8454461 |
cccttgggaaaaatggaacaataggaaaagcaacgctttagattagaagggagattatggtaactcaatctcagtactgagttaa |
8454545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 254 - 444
Target Start/End: Complemental strand, 6591652 - 6591462
Alignment:
| Q |
254 |
aagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatt |
353 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||| | ||||| || ||||| ||||||||||||||||||||||| |||||| | || ||||| | |
|
|
| T |
6591652 |
aagaattcattgcccaacttttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaact |
6591553 |
T |
|
| Q |
354 |
cataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaat |
444 |
Q |
| |
|
|||| |||||||||||||| |||||| | |||||||||||||| |||||||| ||||| ||| ||||||||||||||| ||| | |||||| |
|
|
| T |
6591552 |
catagcccttgggaaatatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctcagtacggggttaat |
6591462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 227 - 429
Target Start/End: Complemental strand, 6722420 - 6722218
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
|||||||| || ||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |||||| |||||||| |
|
|
| T |
6722420 |
aaaaatgatattgacactagatgatcaaagaattcattacccaactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatccaaa |
6722321 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
|||| || | |||| || ||||| ||||| |||||||||||||| |||||| | |||||||||||||| |||| ||||||||| ||| | ||||||| |
|
|
| T |
6722320 |
gcttaattagttcactcttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaagaaactcaa |
6722221 |
T |
|
| Q |
427 |
tct |
429 |
Q |
| |
|
||| |
|
|
| T |
6722220 |
tct |
6722218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 227 - 444
Target Start/End: Complemental strand, 4389294 - 4389077
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| || ||||||||| | || || ||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || || ||||||| |
|
|
| T |
4389294 |
aaaaatgaaattgattctagatcaacaaataactcattacccaactcttcttcacttttgtcacttccgcaacacttcaacaaaccatccgctatccaaa |
4389195 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||| |||||| || ||||| | ||| ||||||||||| |||||| | | ||||||||| || ||| |||||||||||| |||||||||||| |
|
|
| T |
4389194 |
gcttgattaattcacgcttgtcaaaaatgtgacctttgggaaatatggaacaataagaaaaacaacgtttaagaatggaagggagatgatggtaactcaa |
4389095 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
4389094 |
tctcagtactgaattaat |
4389077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 254 - 431
Target Start/End: Original strand, 7749732 - 7749909
Alignment:
| Q |
254 |
aagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatt |
353 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| || || || ||||| | |
|
|
| T |
7749732 |
aagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaact |
7749831 |
T |
|
| Q |
354 |
cataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
431 |
Q |
| |
|
|||| ||||| |||||||| |||||| | |||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
7749832 |
catagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctca |
7749909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 223 - 444
Target Start/End: Original strand, 5298405 - 5298626
Alignment:
| Q |
223 |
ttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatc |
322 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||||||||||||||||||||||||| |||| || ||| ||| || |||| |||||||||||||||| |
|
|
| T |
5298405 |
ttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttatcaattctgcagcacttcaacaaaccttctgccatc |
5298504 |
T |
|
| Q |
323 |
caaagcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaac |
422 |
Q |
| |
|
||||||||||| |||||| | || ||| |||||| | |||||||| |||||| | | |||||||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
5298505 |
caaagcttgattaattcagccttgcaaaaaatataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaac |
5298604 |
T |
|
| Q |
423 |
tcaatctcaatactgagttaat |
444 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
5298605 |
tcaacctcaaaactgagttaat |
5298626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 227 - 444
Target Start/End: Original strand, 5267734 - 5267951
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||| |||||||||| || |||| |||||||| ||||||||| ||||| ||| |||||| || ||||||||||| || |||||||||| |
|
|
| T |
5267734 |
aaaaatgaaattgacactagatcatctaataattgattacccagctcttcttcgcttttttctgttccgcggcacttcagcaaaccgtcggccatccaaa |
5267833 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
| ||||| |||||| |||| ||||| | || |||||||||| |||||| | | |||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
5267834 |
gtttgattaattcacctttgtcaaaccacttgcctttgggaaataaggaacaataagaaaaacagcgcttcagattggaagggagatgatggtaactcaa |
5267933 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
5267934 |
tctcagtactgaattaat |
5267951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 227 - 431
Target Start/End: Complemental strand, 13270879 - 13270681
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||| ||||| ||| ||||||||| ||||||| ||||||||||||||||||| ||||| || |||| || |||||||||| ||||||||||| |
|
|
| T |
13270879 |
aaaaacgaaattgacactagatcattgaagaatttattacccaactcttcttcatttttggctattccc------tttagcaaaccttgtgccatccaaa |
13270786 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||| ||| |||| |||||||| |||||||||||||||||||| |||||| | ||||||||| |||| ||||||||||| || || ||||||||| |
|
|
| T |
13270785 |
gcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaatatgcaaaacaatgcttcagattggaaggtaggctaaggtaactcat |
13270686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 254 - 431
Target Start/End: Original strand, 6882234 - 6882411
Alignment:
| Q |
254 |
aagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaatt |
353 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||| | ||| |||| ||||||||||||||||||||| || || | |||| | || |||| | |
|
|
| T |
6882234 |
aagaattcattacctaactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagct |
6882333 |
T |
|
| Q |
354 |
cataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
431 |
Q |
| |
|
|||| |||||||||||||| |||||| | |||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
6882334 |
catagcccttgggaaatatagaacaataagcaaaacaacgcttcagattggaagggaggataaggtaactcaatctca |
6882411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 425
Target Start/End: Original strand, 6245012 - 6245188
Alignment:
| Q |
243 |
ctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatc |
342 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||| || |||| || | ||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
6245012 |
ctagatcattgaagaatttattacccaactcttcttcatctttggctattccc------tttatcaaaccttctgccatccaaagtttgattaatccatc |
6245105 |
T |
|
| Q |
343 |
tttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactca |
425 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| | ||||||||| |||| |||||||||||||| ||| ||||||||| |
|
|
| T |
6245106 |
cttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaagggaggttaaggtaactca |
6245188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 432
Target Start/End: Original strand, 6258977 - 6259104
Alignment:
| Q |
305 |
agcaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattgg |
404 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| | |||||||| |||||||||||||||||||| |||||| | ||||||||| |||| ||||||| |
|
|
| T |
6258977 |
agcaaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattgg |
6259076 |
T |
|
| Q |
405 |
aagggagattatggtaactcaatctcaa |
432 |
Q |
| |
|
||||||| || ||||||||| |||||| |
|
|
| T |
6259077 |
aagggaggctaaggtaactcattctcaa |
6259104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 8569449 - 8569343
Alignment:
| Q |
80 |
caaatgtgacgtgttctttcagttatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagat |
179 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| || | || |||||||||||||||||||| ||||||| |
|
|
| T |
8569449 |
caaatatgacgtgtcctttcagatatatcttgcagcctatcaccctcaatttgtaagcaaaattctcgagattctgattttgccaaatcattaacaagat |
8569350 |
T |
|
| Q |
180 |
catgcat |
186 |
Q |
| |
|
||||||| |
|
|
| T |
8569349 |
catgcat |
8569343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 411
Target Start/End: Original strand, 6265394 - 6265578
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
|||||||| || ||| |||| | ||| ||||||||||| || |||||||||| ||||||| |||||||||||| || | |||||||||||||||||||| |
|
|
| T |
6265394 |
aaaaatgacattgacactagttgatcgaagaattcattccctaactcttctttgcttttgtttcttccgcaacaatttaacaaaccttctgccatccaaa |
6265493 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggag |
411 |
Q |
| |
|
|| |||| |||||| | | ||||| |||||||||||||||| | || ||| | |||||||||||||| ||||||| |||||| |
|
|
| T |
6265494 |
gcctgattaattcaccctcctcaaactcataacccttgggaagattagaccaacaagcaaaacaacgcttcagattgggagggag |
6265578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 411
Target Start/End: Original strand, 6142070 - 6142173
Alignment:
| Q |
308 |
aaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | || ||||| ||||| |||||||||||||| |||||| | ||||||||| |||| |||| |||| |
|
|
| T |
6142070 |
aaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaatgcttcagatcagaag |
6142169 |
T |
|
| Q |
408 |
ggag |
411 |
Q |
| |
|
|||| |
|
|
| T |
6142170 |
ggag |
6142173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 338
Target Start/End: Original strand, 5280187 - 5280464
Alignment:
| Q |
67 |
atcaagatcgcaacaaatgtgacgtgttctttcagttatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaa |
166 |
Q |
| |
|
||||||| ||| ||||| || |||| |||||||| |||||||||| ||||||||||| ||| |||| |||| || ||| ||||| |||| ||| |
|
|
| T |
5280187 |
atcaagagagcaccaaatatggcgtgctctttcagggatatcttgcaccctatcaccctctattcgtaaagaaaattctcctgacactgatcttgctaaa |
5280286 |
T |
|
| Q |
167 |
tcattgacaagatcatgcatgacaaaac------ttttatcaccccatgaatatagtggttcttgaaaaaatgaaatggactctagatcatccaagaatt |
260 |
Q |
| |
|
||| |||||||||||||||||| ||| | | |||||| || || ||||| || || ||| | ||| ||||| ||||| |||| ||| || |||| |
|
|
| T |
5280287 |
tcaatgacaagatcatgcatgaaaaaccggtgcttgttatcaagccctggatataatgattgttgtataaacgaaattgactcaagataatcaaaaaatt |
5280386 |
T |
|
| Q |
261 |
cattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaatt |
338 |
Q |
| |
|
||| ||||||||||| |||||| || ||| || ||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
5280387 |
catcacccaactctttttcactcttttctgctctaaaacatttcagcaacccatctgccatccaaagcttgattaatt |
5280464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 444
Target Start/End: Original strand, 5249847 - 5250064
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| || |||||||| | || ||||||||||| || |||| |||||||||||| ||||||| || | || |||||| ||||| ||||| |
|
|
| T |
5249847 |
aaaaatgaaattgatactagatcaacgaataattcattaccgaaatcttgttcacttttgtcaattccgcagcactgcaacaaaccatctgctgcccaaa |
5249946 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||| || | |||| | ||| |||| ||||| || |||||||| |||||| | | ||| |||||||| ||| | ||||||||| |||||||||||| |
|
|
| T |
5249947 |
gctggactagttcaccctttccaaaactgtaacctttaggaaatatggaacaataagaaaagcaacgcttaagaatagaagggagacaatggtaactcaa |
5250046 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
5250047 |
tctcagtactgaattaat |
5250064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 6916721 - 6916760
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatgacaaa |
192 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6916721 |
ctgattttgctaaatcattgacaagatcatgcatgacaaa |
6916760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 6520599 - 6520562
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatgaca |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6520599 |
ctgattttgctaaatcattgacaagatcatgcatgaca |
6520562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 6591762 - 6591727
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatga |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6591762 |
ctgattttgctaaatcattgacaagatcatgcatga |
6591727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 8589336 - 8589370
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatg |
187 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
8589336 |
ctgattttgctaaatcattgacaagatcatgcatg |
8589370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 6735597 - 6735634
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatgaca |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6735597 |
ctgattttgttaaatcattgacaagatcatgcatgaca |
6735634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 8454249 - 8454286
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatgaca |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8454249 |
ctgattttgttaaatcattgacaagatcatgcatgaca |
8454286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 80 - 451
Target Start/End: Complemental strand, 6573796 - 6573425
Alignment:
| Q |
80 |
caaatgtgacgtgttctttcagttatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagat |
179 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||| || |||||||| ||||||| |
|
|
| T |
6573796 |
caaatatgacgtgtcctttcagatatatcttgcaccctatcaccctcaatttgtaagcaaaatttttgggactctgatttagctaaatcatttacaagat |
6573697 |
T |
|
| Q |
180 |
catgcatgacaaaacttttatcaccccatgaatatagtggttcttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttc |
279 |
Q |
| |
|
|||||||| || | ||| ||| || | || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6573696 |
catgcatgcataatcccatatgaccaaatatcgactctgattgttggaaaaatgaaatggactctagatcatccaagaattcattacccaactcttgttc |
6573597 |
T |
|
| Q |
280 |
acttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaa |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
6573596 |
acttttgtctcttccgcaacatttcagcaaaccttcagccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaaatatggaacaa |
6573497 |
T |
|
| Q |
380 |
aaggcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaatttcatca |
451 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
6573496 |
tatgcaaaacaacgctttagattggaagggagattatgataactcaatctcaataccgagttaatttcatca |
6573425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 227 - 444
Target Start/End: Complemental strand, 7831 - 7614
Alignment:
| Q |
227 |
aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa |
326 |
Q |
| |
|
||||||||||| ||||| |||||| | || | |||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
7831 |
aaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctcccatccaaa |
7732 |
T |
|
| Q |
327 |
gcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaa |
426 |
Q |
| |
|
||||||||||| | |||||||||||| ||| ||||||||||| || |||||| ||| ||| |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
7731 |
gcttgatcaatacttctttttcaaatctatagcccttgggaaaaatggaacaataggaaaagcaacgccttagatcagaagggagattatggtaactcaa |
7632 |
T |
|
| Q |
427 |
tctcaatactgagttaat |
444 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
7631 |
tctcagtactgagttaat |
7614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 7899 - 7862
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatgaca |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7899 |
ctgattttgttaaatcattgacaagatcatgcatgaca |
7862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 431
Target Start/End: Complemental strand, 35140682 - 35140494
Alignment:
| Q |
243 |
ctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatc |
342 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| ||||| || || | |||| || ||||||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
35140682 |
ctagatcattgaagaatttattacccaactcttcttcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatc |
35140583 |
T |
|
| Q |
343 |
tttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactcaatctca |
431 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| || | ||||||||| |||| |||||||||||||| || ||||||||| ||||| |
|
|
| T |
35140582 |
attttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctca |
35140494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 429
Target Start/End: Complemental strand, 25242488 - 25242285
Alignment:
| Q |
227 |
aaaaatgaaatggactctag-atcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaa |
325 |
Q |
| |
|
||||||||||| ||||||| |||||| || || || |||||||||||||||||||||||| | ||| ||||| |||||||| |||| ||| |||||| |
|
|
| T |
25242488 |
aaaaatgaaatcgactctattatcatcgaataactctctacccaactcttcttcacttttgtttgttctacaacacttcagcaagccttatgctatccaa |
25242389 |
T |
|
| Q |
326 |
agcttgatcaattcatctttttcaaattcataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggaagggagattatggtaactca |
425 |
Q |
| |
|
|||||||| |||||| | || ||| ||||||| || |||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25242388 |
agcttgattaattcacccttgcaaaaagcataacctttaggaaatatggaacagtaactaaaacaacgcttcagattggaagggagattatggtaactca |
25242289 |
T |
|
| Q |
426 |
atct |
429 |
Q |
| |
|
|||| |
|
|
| T |
25242288 |
atct |
25242285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 25242560 - 25242520
Alignment:
| Q |
153 |
ctgattttgccaaatcattgacaagatcatgcatgacaaaa |
193 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
25242560 |
ctgattttgctaaatcattgacaagatcatgcttaacaaaa |
25242520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 358 - 253
Alignment:
| Q |
81 |
aaatgtgacgtgttctttcagttatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagatc |
180 |
Q |
| |
|
|||| |||||||| |||| | |||||| |||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||| |
|
|
| T |
358 |
aaatatgacgtgtcctttttgatatatcgtgcaccctatcaccctcaatttgtaagcaaaattgtcgagactctgattttgccaaatcattaacaagatc |
259 |
T |
|
| Q |
181 |
atgcat |
186 |
Q |
| |
|
|||||| |
|
|
| T |
258 |
atgcat |
253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 190 - 140
Alignment:
| Q |
315 |
ctgccatccaaagcttgatcaattcatctttttcaaattcataacccttgg |
365 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
190 |
ctgccatccaaagcttaatcaattcatctttttcatattcataacccttgg |
140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 14296976 - 14296938
Alignment:
| Q |
156 |
attttgccaaatcattgacaagatcatgcatgacaaaac |
194 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14296976 |
attttgccaaatcattgagaagatcatgcatgacaaaac |
14296938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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