View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_13 (Length: 460)
Name: NF20362_high_13
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Original strand, 3828535 - 3828967
Alignment:
| Q |
12 |
atgaacctggatatttggaggcttatacaaagtctataaatgtgtgcattttataatatttggattctgctttcaattttatatagaaaaaatctgaatg |
111 |
Q |
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| T |
3828535 |
atgaacctggatatttggaggcttatacaaagtctataaatgtgtgcattttataatatttggattctgctttcaattttatatagaaaaaatctgaatg |
3828634 |
T |
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| Q |
112 |
aaaaggttttggttgatttttatattataataatcagggatactcgtgtatctgctgcttctgataatgacatcattaagtaataatctacgtttgaaca |
211 |
Q |
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| T |
3828635 |
aaaaggttttggttgatttttatattataataatcagggatactcgtgtatctgctgcttctgataatgacatcattaagtaataatctacgtttgaaca |
3828734 |
T |
|
| Q |
212 |
gaaaaagaaacttaaggaatgaaaattaagtaattaacaatgaatcaaatcattgctgccactttttgttgatcgtttaaagtgtacaataagaatattt |
311 |
Q |
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| T |
3828735 |
gaaaaagaaacttaaggaatgaaaattaagtaattaacaatgaatcaaatcattactgccactttttgttgatcgtttaaagtgtacaataagaatattt |
3828834 |
T |
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| Q |
312 |
gtggtttgtttttatgtagcacttttggtcttttatactttttctgtcattccttatacgcattgcatgtgcttaagtttagtcattggtgaagaaaact |
411 |
Q |
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| T |
3828835 |
gtggtttgtttttatgtagcacttttggtcttttatactttttctgtcatt-cttatacgcattgcatgtgcttaagtttagtcattggtgaagaaaact |
3828933 |
T |
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| Q |
412 |
ttgaggaaaataacgaaaaacaaattgttaaacc |
445 |
Q |
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| T |
3828934 |
ttgaggaaaataacgaaaaacaaattgttaaacc |
3828967 |
T |
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