View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20362_high_18 (Length: 414)

Name: NF20362_high_18
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20362_high_18
NF20362_high_18
[»] chr2 (4 HSPs)
chr2 (322-400)||(966534-966612)
chr2 (186-318)||(980659-980793)
chr2 (33-82)||(4261148-4261197)
chr2 (33-82)||(44536486-44536535)
[»] chr5 (1 HSPs)
chr5 (37-81)||(132044-132088)
[»] chr3 (3 HSPs)
chr3 (34-81)||(3612591-3612638)
chr3 (40-82)||(44506048-44506090)
chr3 (41-81)||(44506346-44506386)
[»] chr1 (5 HSPs)
chr1 (31-82)||(47193719-47193770)
chr1 (41-82)||(9172860-9172901)
chr1 (41-82)||(9180842-9180883)
chr1 (28-81)||(12115254-12115307)
chr1 (33-82)||(25780190-25780239)
[»] chr4 (3 HSPs)
chr4 (31-81)||(30055506-30055556)
chr4 (37-82)||(30799291-30799336)
chr4 (26-82)||(33369497-33369553)
[»] chr8 (3 HSPs)
chr8 (29-82)||(10682362-10682415)
chr8 (41-82)||(44379525-44379566)
chr8 (41-81)||(20223409-20223449)
[»] chr7 (2 HSPs)
chr7 (41-81)||(8869585-8869625)
chr7 (41-81)||(44307921-44307961)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 966612 - 966534
Alignment:
Q  322 tgggtaaaccagaaatcggtaatattacatgataaacatatattaacaaaatcaaaaataacaatggacgtgtgttttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  966612 tgggtaaaccagaaatcggtaatattacatgataaacatatattaacaaaataaaaaatatcaatggacgtgtgttttg 966534  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 318
Target Start/End: Complemental strand, 980793 - 980659
Alignment:
Q  186 tctgtcacaaaaccgatataatcctcgaaacaccaaacaagtataatc-attgattttcttttnnnnnnnnnnntttggattgattttttgtcaaagaaa 284  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||| || ||||||||||            || ||||||||||||||||| |||||    
T  980793 tctgtcacaaaacccatataattttcgaaacaccaaacaagtataatcgatcgattttctttaaaataaaaaaatt-ggattgattttttgtcagagaaa 980695  T
Q  285 aatataattgactg--atttagatattgaatttgtc 318  Q
    ||||||||||| ||  ||||||||||||||||||||    
T  980694 aatataattgattgatatttagatattgaatttgtc 980659  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 4261148 - 4261197
Alignment:
Q  33 ttttaggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||||||  |||||||| || |||||||| |||||    
T  4261148 ttttaggtaaaattacacaattagtcccttaattttattttaggtaacac 4261197  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 44536535 - 44536486
Alignment:
Q  33 ttttaggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||||||  |||||||| || |||||||| |||||    
T  44536535 ttttaggtaaaattacacaattagtcccttaactttattttaggtaacac 44536486  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 132044 - 132088
Alignment:
Q  37 aggtaaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||    
T  132044 aggtaaaattacacaattaatcccttaatttaattttaggtaaca 132088  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 3612591 - 3612638
Alignment:
Q  34 tttaggtaaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    |||||||||||||||||||||  |||||||| ||||||||||| ||||    
T  3612591 tttaggtaaaattacacaattagtcccttaacttaattttaggtaaca 3612638  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 44506048 - 44506090
Alignment:
Q  40 taaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||    
T  44506048 taaaattacacaattaatcccttaacttaattttaggtaacac 44506090  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 44506386 - 44506346
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    |||||||||||||| ||||||||| ||||||||||| ||||    
T  44506386 aaaattacacaattaatcccttaacttaattttaggtaaca 44506346  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 47193719 - 47193770
Alignment:
Q  31 ttttttaggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||| |||||    
T  47193719 ttttttaggtaaaattacacaattcatctattaacataattttaggtaacac 47193770  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 9172901 - 9172860
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  9172901 aaaattacacaattcatcctttaacttaattttaggtaacac 9172860  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 9180883 - 9180842
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  9180883 aaaattacacaattcatcctttaacttaattttaggtaacac 9180842  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 12115307 - 12115254
Alignment:
Q  28 atattttttaggtaaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    |||||| ||||| ||||||||||||||  |||||||| ||||||||||| ||||    
T  12115307 atatttattaggcaaaattacacaattagtcccttaacttaattttaggtaaca 12115254  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 25780239 - 25780190
Alignment:
Q  33 ttttaggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||||||  |||||||| || |||||||| |||||    
T  25780239 ttttaggtaaaattacacaattagtcccttaactttattttaggtaacac 25780190  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 30055556 - 30055506
Alignment:
Q  31 ttttttaggtaaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    ||||||||| ||||||||||||||  |||||||| ||||||||||| ||||    
T  30055556 ttttttaggcaaaattacacaattagtcccttaacttaattttaggtaaca 30055506  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 30799291 - 30799336
Alignment:
Q  37 aggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||||||||||||  |||||||| ||||||||||| |||||    
T  30799291 aggtaaaattacacaattagtcccttaacttaattttaggtaacac 30799336  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 33369497 - 33369553
Alignment:
Q  26 atatattttttaggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    ||||||||| |||| ||||||||||||||  |||||||| || |||||||| |||||    
T  33369497 atatattttataggcaaaattacacaattagtcccttaactttattttaggtaacac 33369553  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 10682415 - 10682362
Alignment:
Q  29 tattttttaggtaaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    |||||||||||| |||||||||||||  |||||||| || |||||||| |||||    
T  10682415 tattttttaggtgaaattacacaattagtcccttaactttattttaggaaacac 10682362  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 44379525 - 44379566
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaacac 82  Q
    |||||||||||||| ||||||||| ||||||||||| |||||    
T  44379525 aaaattacacaattaatcccttaacttaattttaggtaacac 44379566  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 20223449 - 20223409
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    |||||||||||||| ||||||||| ||||||||||| ||||    
T  20223449 aaaattacacaattaatcccttaacttaattttaggtaaca 20223409  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 8869585 - 8869625
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  8869585 aaaattacacaattcgtcccttaacttaattttaggtaaca 8869625  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 44307961 - 44307921
Alignment:
Q  41 aaaattacacaattcatcccttaaattaattttagggaaca 81  Q
    |||||||||||||| ||||||||| ||||||||||| ||||    
T  44307961 aaaattacacaattaatcccttaacttaattttaggtaaca 44307921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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