View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_19 (Length: 410)
Name: NF20362_high_19
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 4624369 - 4623979
Alignment:
| Q |
1 |
ttggtacaagtccacacacaaccaacttcttgctcatgcagatgttgtcgaattgtataaaaccacatatcaggctcaaaatggtgcaataggcattgga |
100 |
Q |
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| T |
4624369 |
ttggtacaagtccacacacaaccaacttcttgctcatgcagatgttttcgaattgtataaaaccacatatcaggctcaaaatggtgtaataggcattgga |
4624270 |
T |
|
| Q |
101 |
ttaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgatttcatgtttggatggtaacaactatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4624269 |
ttaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgatttcatgtttggatggtaacaactatact |
4624170 |
T |
|
| Q |
201 |
ttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttgaaatcttctttatctgtttgcaggtttatacaaccactgacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4624169 |
ttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttaaaatcttctttatctgtttgcaggtttatacagccactgacaa |
4624070 |
T |
|
| Q |
301 |
caggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatctaagagtcttattgggtcata |
391 |
Q |
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| T |
4624069 |
caggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgcagagcaatctaagagtcttattgggtcata |
4623979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 75 - 391
Target Start/End: Complemental strand, 4599961 - 4599651
Alignment:
| Q |
75 |
ctcaaaatggtgcaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgattt |
174 |
Q |
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| T |
4599961 |
ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgattt |
4599862 |
T |
|
| Q |
175 |
catgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttgaaatcttctttatctgt |
274 |
Q |
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|||||||||||||||| |||| ||||| ||| ||||||| ||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
4599861 |
catgtttggatggtaatgacta-ctttttttaccttttctacgacaaccatggatcacgacaaaattgtgacgg--taatttaaaatcttctttatctgt |
4599765 |
T |
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| Q |
275 |
ttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatctaag |
374 |
Q |
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| T |
4599764 |
ttgcaggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatctaaa |
4599668 |
T |
|
| Q |
375 |
agtcttattgggtcata |
391 |
Q |
| |
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||||||||||||||||| |
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| T |
4599667 |
agtcttattgggtcata |
4599651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 390
Target Start/End: Complemental strand, 25038291 - 25038173
Alignment:
| Q |
272 |
tgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatct |
371 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||| |
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| T |
25038291 |
tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatct |
25038192 |
T |
|
| Q |
372 |
aagagtcttattgggtcat |
390 |
Q |
| |
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|||| ||||||||| |||| |
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| T |
25038191 |
aagattcttattggctcat |
25038173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 4600110 - 4600048
Alignment:
| Q |
12 |
ccacacacaaccaacttcttgctcatgcagatgttgtcgaattgtataaaaccacatatcagg |
74 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
4600110 |
ccacacacaaccaacttctttctcatgcagctgttgtcgaattgtataaaaccaaatatcagg |
4600048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 390
Target Start/End: Complemental strand, 25017186 - 25017068
Alignment:
| Q |
272 |
tgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatct |
371 |
Q |
| |
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||||||||||||||| || ||| |||| ||||||||||||||| |||| ||||||||| || |||| || |||||||||||||| |||||||||| |
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| T |
25017186 |
tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatct |
25017087 |
T |
|
| Q |
372 |
aagagtcttattgggtcat |
390 |
Q |
| |
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|||| |||||||| |||| |
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| T |
25017086 |
aagatgcttattggctcat |
25017068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 18804691 - 18804832
Alignment:
| Q |
251 |
taatttgaaatcttctttatctgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttacca |
350 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| || || || | |||||| |
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| T |
18804691 |
taatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtgtctaatttg---gaaacattacca |
18804787 |
T |
|
| Q |
351 |
aagttcactgcagagcaatctaagagtcttattgggtcatacgat |
395 |
Q |
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||||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
18804788 |
aagttcactaaagagcaatatgagagtcttattgggtcatacgat |
18804832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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