View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_28 (Length: 325)
Name: NF20362_high_28
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 44565907 - 44566169
Alignment:
| Q |
14 |
gaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcattgtgac |
113 |
Q |
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| T |
44565907 |
gaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcattgtgat |
44566006 |
T |
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| Q |
114 |
atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgaca |
213 |
Q |
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| T |
44566007 |
atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttgaca |
44566106 |
T |
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| Q |
214 |
tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggacttt |
276 |
Q |
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| T |
44566107 |
tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggacttt |
44566169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 36033142 - 36032994
Alignment:
| Q |
162 |
tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg |
261 |
Q |
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| T |
36033142 |
tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg |
36033043 |
T |
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| Q |
262 |
ctgcagttggactttcattctatagctatggttttcctctagttggcac |
310 |
Q |
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| T |
36033042 |
ctgcagttggactttcattttatggttatggttttcctcttgttggcac |
36032994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 20121896 - 20121955
Alignment:
| Q |
221 |
tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcatt |
280 |
Q |
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||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| |
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| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatt |
20121955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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