View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_31 (Length: 290)
Name: NF20362_high_31
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 5119362 - 5119087
Alignment:
| Q |
16 |
ctaacttttgttttttaatgtagctgactataaatttaataagtttttcagagagtataattactaaaaataatgtcaaaaatcttgcaatgtgaaaata |
115 |
Q |
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| T |
5119362 |
ctaatttttgttttttaatgtagctgactacaaatttaataagtttttcagagagtatagttactaaaaataatgtcaaaaatcttgcaatgtgaaaata |
5119263 |
T |
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| Q |
116 |
tattttgcaatgg-ttatatatgtcattaaattgaagttgtataattatttagggtttttctaac----------ttgcataggataaggtacaataaat |
204 |
Q |
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| T |
5119262 |
tatttttcaatggattatatatgtcattaaattgaagttgtataattatttagggtttttctaacctatgtaatattgcataggataagatacaataaat |
5119163 |
T |
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| Q |
205 |
gtaccattttttcaacaaaagctatatactgtattaattatccatttcttgaaaaatga---tatatttttccttcatctc |
282 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
5119162 |
gtaccattttttcaacaaaaggtata-----tattaattatccatttattgaaaaatgatagtatatttttcctccatctc |
5119087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 25707322 - 25707243
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtaccattttttc-aacaaaagctatatactgtattaattatccatttcttgaaaaatg |
262 |
Q |
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| T |
25707322 |
ttgcataggataaagtacaataaatgtaccattttttttaacaaaaactat----tatattaattatcattttcttgaaaaatg |
25707243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 20406555 - 20406507
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtaccattttttcaacaaaagctat |
229 |
Q |
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| T |
20406555 |
ttgcataggata-ggtgcaataaatgtatcattttttcaacaaaaactat |
20406507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 38130076 - 38130032
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtacca-ttttttcaacaaa |
223 |
Q |
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| T |
38130076 |
ttgcataggataaggtgcaataaatgtaccacttttttcaacaaa |
38130032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 43574905 - 43574950
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtacca-ttttttcaacaaaa |
224 |
Q |
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|||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
43574905 |
ttgcataggataaggtgcaataaatgtaccacttttttcaccaaaa |
43574950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 9418058 - 9418022
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtaccatttttt |
216 |
Q |
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|||||||||||||||| || ||||||||||||||||| |
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| T |
9418058 |
ttgcataggataaggtgcattaaatgtaccatttttt |
9418022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 22881606 - 22881562
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtacc-attttttcaacaaa |
223 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
22881606 |
ttgcataggataaggtgcaataaatgtacctcttttttcaacaaa |
22881562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 22899541 - 22899497
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtacc-attttttcaacaaa |
223 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
22899541 |
ttgcataggataaggtgcaataaatgtacctcttttttcaacaaa |
22899497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 22914575 - 22914531
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtacc-attttttcaacaaa |
223 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
22914575 |
ttgcataggataaggtgcaataaatgtacctcttttttcaacaaa |
22914531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 52757500 - 52757536
Alignment:
| Q |
180 |
ttgcataggataaggtacaataaatgtaccatttttt |
216 |
Q |
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|||||||||||||||| ||||||||||||||| |||| |
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| T |
52757500 |
ttgcataggataaggtgcaataaatgtaccatgtttt |
52757536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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