View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20362_high_32 (Length: 290)
Name: NF20362_high_32
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 8840542 - 8840269
Alignment:
| Q |
1 |
tactgattctttccagccccagctgctgttgaatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttcatatcctccgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8840542 |
tactgattctttccagccccagctgctgttgaatctcctcgaacgcggtccttctcgccacaatgtacacctgacaacactcactttcatatcctccgat |
8840443 |
T |
|
| Q |
101 |
caacatctcccccacaatcttactcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcctgatgatctgat |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8840442 |
caacatctcccccacaatcttgctcatacaaacaatcgcctcatcaggataaccaggaaaattcgtttcgaattcttctggttgatcctgatgatctgat |
8840343 |
T |
|
| Q |
201 |
tgcccgtcctgttgatctgacgccac---ttttcgttttgcatcaaccttttcattgatattgatatcaggatt |
271 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8840342 |
tgcccgtcctgttgatccgacaccacttgttttcgttttgcatcaaccttttcattgatattgatatcaggatt |
8840269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University