View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_4 (Length: 572)
Name: NF20362_high_4
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 206 - 562
Target Start/End: Complemental strand, 33144824 - 33144473
Alignment:
| Q |
206 |
ctgctccttgttgatgtttttgagtttaacaagcctttctgttaaaccgtccactttcggtgtcaattttattaacaattttatatgttttctggctaat |
305 |
Q |
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| T |
33144824 |
ctgctccttgttgatgtttttgagtttaacaagcctttctgttaaaccgtccactttcggtgtcaattttattaacaattttctatgttttcgggctaat |
33144725 |
T |
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| Q |
306 |
ttctcgaatgagctaactgtgttttccaaagatggagtatgttgatattgttgggtttaacaagtgattctttgacacgatccagttctgctttgaagtc |
405 |
Q |
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| T |
33144724 |
ttctcgaaggagctaactgtgttttccacagatggaggag-----tattgttgggtttgacaagtgattctttgacacgatcaagttctgctttgaagtc |
33144630 |
T |
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| Q |
406 |
taatgaaattttttcatgttctctagtctcttcctccaaatcgctaattgtgttttccatagatggcattttgctcatcatgttgagttcaacaaataac |
505 |
Q |
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| T |
33144629 |
taatgaaattttttcatgttctctagtctcttcctccaaatcgcgaattgtgttttccatagatggcattttgctcatcatattgagttcagcaaataac |
33144530 |
T |
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| Q |
506 |
tctttgaaacgatccactttcgctctcaactccatcgacagttttccatcttctctg |
562 |
Q |
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| T |
33144529 |
tctttgaaacgatccactttcgctctcaactccatcgacagttttccatcttctctg |
33144473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33145028 - 33144940
Alignment:
| Q |
1 |
atgctcatgagttagtaattatataatatatacaatacctaaacataataaagtaatt-aagtgaatgctcacgagtttgtaattatac |
88 |
Q |
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| T |
33145028 |
atgctcatgagtttgtaattatataatatatacaatacctaaacataataaagtcattaaagtgaatgctcacgagtttgtaattatac |
33144940 |
T |
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