View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_43 (Length: 210)
Name: NF20362_high_43
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 14838411 - 14838585
Alignment:
| Q |
20 |
aaaacatagtatacaattatgaataaacttcttctattgattgaattagtnnnnnnnctaagttaattttacgagataaatgctctatagcaccctcagt |
119 |
Q |
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| T |
14838411 |
aaaacatagtatacaattatgaataaacttcttctattgattgaattagtaaaaaaactaagttaattttacgagataaatgctctatagcaccctcggt |
14838510 |
T |
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| Q |
120 |
tttgctacaaaaaaca-tcgagttatttgatcataacttccaaaagcacaaaacctatagatcgtagctcccaaa |
193 |
Q |
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||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14838511 |
tttgctaaaaaaaaaactcgagttatttgatcataacttccaaaagcacaaaacctatagatcgtagctcccaaa |
14838585 |
T |
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