View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20362_high_8 (Length: 504)
Name: NF20362_high_8
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20362_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 190 - 486
Target Start/End: Complemental strand, 8252773 - 8252477
Alignment:
| Q |
190 |
ctatatgaaaaaatatatgattcgtaaagaattaacattgtaggctcatgttatttgacataatttgaaatttatttcattaataatgtattgtcactga |
289 |
Q |
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| T |
8252773 |
ctatatgaaaaaatatatgattcgtaaagaattaacattgtaggctcatgttatttgacataatttgaaatttatttcattaataatgtattgtcactga |
8252674 |
T |
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| Q |
290 |
atacatcttgcaaaacttttatccaaacagtaattataaaaattgtgtgttaaaaactagagcaaatttagctcaatttgataaaagtagtaaataatcg |
389 |
Q |
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| T |
8252673 |
atacatcttccaatacttttatccaaacagtaattataaaaattgtgtgttaaaaactagagcaaatttagctctatttgataaaagtagtagataatcg |
8252574 |
T |
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| Q |
390 |
ataagttaattttattttaacagagcaaaatgcaatatgttaacacaaaaacaatattgaaacaagaccaaaaagcaaaattaatgtatgtccacac |
486 |
Q |
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| T |
8252573 |
ataagttaattttattttatcaaagcaaaatggaatatgttaacccaataacaatattgaaacaagattaaaaaccaaaattaatgtatgcccacac |
8252477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 8252945 - 8252825
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaattgtctctcacgcttgtagtatgaatctgaatctgcttct |
117 |
Q |
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| T |
8252945 |
aaagaggaaggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtagcatgaatctgcatctgcttct |
8252846 |
T |
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| Q |
118 |
tatcagaaagtgcaatcgaca |
138 |
Q |
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| T |
8252845 |
tatcagaaagtgcaatcgaca |
8252825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 8350099 - 8350020
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaattgtctctcacgcttgtagt |
97 |
Q |
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| T |
8350099 |
aaagaggaaggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagt |
8350020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 8260667 - 8260588
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaattgtctctcacgcttgtagt |
97 |
Q |
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| T |
8260667 |
aaagagcaaagaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagt |
8260588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 8356392 - 8356332
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaat |
78 |
Q |
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| T |
8356392 |
aaagagcaaggaaaaatcaatgggagctccaattgtagttccttatttccctgtcaacaat |
8356332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 8258560 - 8258522
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagt |
56 |
Q |
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| T |
8258560 |
aaagagtaaggaaaaatcaaagggagctccaattgtagt |
8258522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 8265633 - 8265595
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagt |
56 |
Q |
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| T |
8265633 |
aaagagtaaggaaaaatcaaagggagctccaattgtagt |
8265595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 8352825 - 8352768
Alignment:
| Q |
18 |
aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaac |
75 |
Q |
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|||||| ||||||||||| || |||||| ||||||||||||||||||| |||||||| |
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| T |
8352825 |
aaagagaaaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaac |
8352768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 8334093 - 8334053
Alignment:
| Q |
25 |
aaggaaaaatcaaagggagctccaattgtagtttcttattt |
65 |
Q |
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| T |
8334093 |
aaggaaaaatcaaaaggagttccaattgtagtttcttattt |
8334053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 8360558 - 8360518
Alignment:
| Q |
25 |
aaggaaaaatcaaagggagctccaattgtagtttcttattt |
65 |
Q |
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| T |
8360558 |
aaggaaaaatcaataggagctccaattgtagttacttattt |
8360518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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