View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20362_high_9 (Length: 498)

Name: NF20362_high_9
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20362_high_9
NF20362_high_9
[»] chr1 (6 HSPs)
chr1 (19-463)||(41452969-41453413)
chr1 (38-170)||(41431165-41431297)
chr1 (41-463)||(41425755-41426164)
chr1 (42-159)||(41441817-41441934)
chr1 (288-461)||(41441971-41442146)
chr1 (320-370)||(41431446-41431496)
[»] chr2 (3 HSPs)
chr2 (50-416)||(33363002-33363364)
chr2 (40-170)||(33369411-33369541)
chr2 (288-463)||(33369667-33369842)
[»] chr7 (2 HSPs)
chr7 (217-455)||(7763254-7763490)
chr7 (52-170)||(7763517-7763635)
[»] scaffold0648 (2 HSPs)
scaffold0648 (41-170)||(5244-5373)
scaffold0648 (288-389)||(5479-5580)
[»] scaffold0274 (3 HSPs)
scaffold0274 (41-170)||(18085-18214)
scaffold0274 (38-89)||(13707-13758)
scaffold0274 (299-389)||(17878-17968)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 41452969 - 41453413
Alignment:
Q  19 ggagcagctgtggacacagcgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcacta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  41452969 ggagcagctgtggacacagcgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagtaatttgacattgtcactg 41453068  T
Q  119 acacttcagaccattattttagtaaaaataattcctccatgaagcaggttagnnnnnnnnn----cttttctcaaaatgtctcttacagacgtacttttg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||| ||||||||||||||||||||||||||     
T  41453069 acacttcagaccattattttagtaaaaataattcctccatgaagcaggttagtttttttttttttcttttctaaaaatgtctcttacagacgtacttttt 41453168  T
Q  215 tcagttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaagttgggctagaaagaaaaatccaaaaagagtggaagatttt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| || |||||||||||||||||    
T  41453169 tcagttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaagttgggctagaaa----aattcagaaagagtggaagatttt 41453264  T
Q  315 gaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttactt 414  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453265 gaaaaagcatttgccaggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttactt 41453364  T
Q  415 ttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453365 ttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa 41453413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 41431165 - 41431297
Alignment:
Q  38 cgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattt 137  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||  |||| |  ||| ||| |||||||| ||    
T  41431165 cgggtttgacaatcactgatgaacctgaaaatgaaactctgaagaaacttcgaagctttaagcaatttgacgctgtcgcggacagttcggaccattactt 41431264  T
Q  138 tagtaaaaataattcctccatgaagcaggttag 170  Q
    || ||||||| ||||||||||||||||||||||    
T  41431265 tattaaaaatcattcctccatgaagcaggttag 41431297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 41 - 463
Target Start/End: Original strand, 41425755 - 41426164
Alignment:
Q  41 gtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttag 140  Q
    |||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||| | ||| | |||||||||||||||| ||||     
T  41425755 gtttgacaatcactgatgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcagaccattactttat 41425854  T
Q  141 taaaaataattcctccatgaagcaggttagnnnnnnnnncttttctcaa-aatgtctcttacagacgtac-ttttgtcagttctgatcttaattatatgg 238  Q
    ||||| | |||||||||||  | | |||||          |||||| || ||  ||| ||| || | ||| || | |||| ||| |||||||||||||||    
T  41425855 taaaagtcattcctccatggcgtatgttagt---------ttttctaaacaaaatcttttaaaggcatacattgtttcagctctaatcttaattatatgg 41425945  T
Q  239 atttacatatcacttatttcctcagcaaaaccca---agttgggctagaaagaaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtga 335  Q
    |||| ||||    |||||| || ||||||| |||   ||||||||||     ||||| ||   ||||||||||||||||| | ||||| |||||||||||    
T  41425946 atttgcata----ttattttctgagcaaaatccaaagagttgggcta-----aaaaaaccgggaagagtggaagattttggagaagcacttgccgggtga 41426036  T
Q  336 gtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttacttttttgaggttatggacttcac 435  Q
    |||| | ||||||  |||||||| ||||| ||| ||||| |||| ||||||||||||||  |||||||  | ||| |||||| ||| | |||||||| |     
T  41426037 gtttagcattcttgttactaaattgcttgaaattttttccatgtaatatcacatatcacatttagtatcaattttcctttttcgagctgatggactttaa 41426136  T
Q  436 catatgggttgtatccaatcattgttaa 463  Q
    | ||| || | |||||||||||||||||    
T  41426137 cgtatagggtatatccaatcattgttaa 41426164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 41441817 - 41441934
Alignment:
Q  42 tttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttagt 141  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||||  ||| |||||||||| | |||| |    
T  41441817 tttgacaatcactgatgaacccgaaaatgaaactctgaggaaacttcaaagttttaagcaatttgacactgtcaccgacatttcagaccataactttatt 41441916  T
Q  142 aaaaataattcctccatg 159  Q
     |||||| ||||| ||||    
T  41441917 gaaaatatttccttcatg 41441934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 288 - 461
Target Start/End: Original strand, 41441971 - 41442146
Alignment:
Q  288 aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatat--c 385  Q
    |||||||||  ||||||||| |||| || | ||||||||||||||||||||| |||||| | | || |||||||||||||||| ||| |||||||||  |    
T  41441971 aaaaatccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgtaatatcttcaatgtcatatgac 41442070  T
Q  386 acatatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgtt 461  Q
     ||||||||  |||| |||| |||||| |||| |||   |||||||| || ||||||||||||| |||||||||||    
T  41442071 tcatatcacatttagaattcgatttaccttttcgagccaatggactttactatatgggttgtattcaatcattgtt 41442146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 41431446 - 41431496
Alignment:
Q  320 agcatttgccgggtgagtttggtattctttatactaaatagcttgtaatat 370  Q
    |||||||||| || |||||| |||||| | |||||||||||||||||||||    
T  41431446 agcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat 41431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 50 - 416
Target Start/End: Original strand, 33363002 - 33363364
Alignment:
Q  50 tcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttagtaaaaataa 149  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||| |||||||||    
T  33363002 tcactcatgaacccgaaaatgaaaccctgaggaaacttcgaagttttaagcaatttgacactgttactgacacttcagaccattactttattaaaaataa 33363101  T
Q  150 ttcctccatgaagcaggttagnnnnnnnnncttttctcaaaatgtctcttacagacgtacttt-tgtcagttctgatcttaattatatggatttacatat 248  Q
    || |||| |||||||||||||         ||| | | ||||    | ||  ||||||||||| | |||||||| |||||||||||||||||||| ||||    
T  33363102 ttgctccgtgaagcaggttag-ttttttgtcttctataaaaa---atattgaagacgtactttgtttcagttctaatcttaattatatggatttatatat 33363197  T
Q  249 cacttatttcctcagcaaaaccc---aagttgggctagaaagaaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtatt 345  Q
     || |||||||| |||| || ||    |||||||||    | |||||||||  ||||||||| ||||||| |  |||||||||||||||||||| |||||    
T  33363198 tacctatttcctaagcagaatccgaagagttgggct----aaaaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagtttagtatt 33363293  T
Q  346 ctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttactttt 416  Q
    | | ||||||||||||||||||||||||| |||||||||  | ||||||  ||||||||||||||| ||||    
T  33363294 cctgatactaaatagcttgtaatattttcaatgtcatattgcctatcacatttagtattcaatttaatttt 33363364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 33369411 - 33369541
Alignment:
Q  40 ggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattatttta 139  Q
    ||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||    
T  33369411 ggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccattacttta 33369510  T
Q  140 gtaaaaataattcctccatgaagcaggttag 170  Q
     ||||| ||||||||||||||||||||||||    
T  33369511 ataaaagtaattcctccatgaagcaggttag 33369541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 288 - 463
Target Start/End: Original strand, 33369667 - 33369842
Alignment:
Q  288 aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac 387  Q
    |||||||||  ||||||||||||||||| |  ||||||| ||||| |||||| ||||||||  | |||||||||||||||||||||| ||| ||||| ||    
T  33369667 aaaaatccaggaagagtggaagattttggaggagcattttccgggcgagtttagtattcttgttgctaaatagcttgtaatattttccatgccatattac 33369766  T
Q  388 atatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa 463  Q
    | |||||  ||| ||| ||||||||||||| ||| | | |||||| |||||||||||||||||||||| |||||||    
T  33369767 agatcacatttactatccaatttactttttcgagctgacggacttaaccatatgggttgtatccaatcgttgttaa 33369842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 455
Target Start/End: Complemental strand, 7763490 - 7763254
Alignment:
Q  217 agttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaag---ttgggctagaaagaaaaatccaaaaagagtggaagattt 313  Q
    |||||||||||| ||||||||||||||| ||| || |||||||| |||| || ||||    |||||||| |||    ||||||  ||||||||| |||||    
T  7763490 agttctgatcttgattatatggatttacctataacctatttcctgagcagaatccaaagaattgggctaaaaa----aatccaggaagagtggaggattt 7763395  T
Q  314 tgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttact 413  Q
    || | ||||||||||||||||||| | |||||||| |||| ||||| |||||| ||||||| ||||||||||||| |||||   |||||| |||||| |     
T  7763394 tggagaagcatttgccgggtgagtctagtattcttgatacgaaatatcttgtactattttccatgtcatatcacacatcacacgtagtatccaattttc- 7763296  T
Q  414 tttttgaggttatggacttcaccatatgggttgtatccaatc 455  Q
    ||||| || | |||||||| ||||||||||||| ||||||||    
T  7763295 tttttcagctgatggactttaccatatgggttgcatccaatc 7763254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 7763635 - 7763517
Alignment:
Q  52 actgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttagtaaaaataatt 151  Q
    |||||| |||| ||||  |||||||||| |||||||| |||||||||||||||||||| ||||| | ||| |||||||||| | | || |||||| ||||    
T  7763635 actgataaaccagaaagtgaaactctgaggaaacttcaaagttttaagcaatttgacactgtcattgacatttcagaccatcactatattaaaaaaaatt 7763536  T
Q  152 cctccatgaagcaggttag 170  Q
    | ||||||||||| |||||    
T  7763535 cttccatgaagcatgttag 7763517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 5244 - 5373
Alignment:
Q  41 gtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttag 140  Q
    |||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||| | ||| | ||||||| |||||||| ||||     
T  5244 gtttgacaatcactgatgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcggaccattactttat 5343  T
Q  141 taaaaataattcctccatgaagcaggttag 170  Q
    ||||| | |||||||||||  |||||||||    
T  5344 taaaagtcattcctccatggcgcaggttag 5373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 5479 - 5580
Alignment:
Q  288 aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac 387  Q
    |||||||||  ||||||||||||||||| | || ||  |||||||||||||| | ||||||  |||||||| ||||| ||| ||||| ||||||||||||    
T  5479 aaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatcac 5578  T
Q  388 at 389  Q
    ||    
T  5579 at 5580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 18214 - 18085
Alignment:
Q  41 gtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttag 140  Q
    |||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||||||| | ||| | ||||||| |||||||| ||||     
T  18214 gtttgacaatcactgatgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcggaccattactttat 18115  T
Q  141 taaaaataattcctccatgaagcaggttag 170  Q
    ||||| | |||||||||||  |||||||||    
T  18114 taaaagtcattcctccatggcgcaggttag 18085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 13758 - 13707
Alignment:
Q  38 cgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcg 89  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  13758 cgggtttgacaatcactgatgaacctgaaaatgaaactctgaagaaacttcg 13707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 17968 - 17878
Alignment:
Q  299 aagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacat 389  Q
    ||||||||||||||||| | || ||  |||||||||||||| | ||||||  |||||||| ||||| ||| ||||| ||||||||||||||    
T  17968 aagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatcacat 17878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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