View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20362_low_10 (Length: 493)

Name: NF20362_low_10
Description: NF20362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20362_low_10
NF20362_low_10
[»] chr8 (2 HSPs)
chr8 (6-477)||(24257871-24258337)
chr8 (246-344)||(9700041-9700139)
[»] chr3 (2 HSPs)
chr3 (273-360)||(49845456-49845543)
chr3 (269-351)||(10540418-10540500)
[»] chr4 (1 HSPs)
chr4 (269-350)||(8328045-8328126)
[»] chr7 (1 HSPs)
chr7 (264-351)||(36751841-36751928)
[»] chr5 (3 HSPs)
chr5 (81-116)||(41052771-41052806)
chr5 (271-311)||(2103168-2103208)
chr5 (276-344)||(13244483-13244551)
[»] chr6 (1 HSPs)
chr6 (246-351)||(33498659-33498764)
[»] scaffold0388 (1 HSPs)
scaffold0388 (319-351)||(8754-8786)
[»] chr1 (1 HSPs)
chr1 (271-351)||(24417660-24417740)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 477
Target Start/End: Original strand, 24257871 - 24258337
Alignment:
Q  6 agaagcataggattaatttgttaataagtacatagatatcaaaaatcaacaacaaaagacatacctatagtattatgtttggataaacaatttaattaag 105  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24257871 agaaccataggattaatttgttaataagtacatagatatcgaaaatcaacaacaaaagacatacctatagtactatgtttggataaacaatttaattaag 24257970  T
Q  106 cgcttgtagcaatatatatagcataagacttctgaataannnnnnnnnaataacaaaagatataataaaatcaaatcaaatcaatctgttttcgtataaa 205  Q
    ||||||||||||||||||||||||||||||| ||||||          |||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  24257971 cgcttgtagcaatatatatagcataagacttatgaata-tttttttttaataacaaaagatataataaaatcaaatcaaatcaaactgttttcgtataag 24258069  T
Q  206 ctataaattgtttagctatcctaaagagtttatgtaaattaataaggttaaaataacctatgtacatgtcataaattgttttcacacgctcttctaaata 305  Q
    |||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24258070 ctataaattgtttagctatcctaaagagtttatgtaaat----aagcttaaaataacctatgtacatgtcataaattgttttcacaagctcttctaaata 24258165  T
Q  306 gtttcataagtgtttatactactagataaactcaaataaatcaatcgaaagaggatctaaatatatgtaagttacacatctcggtaggggatataagttt 405  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24258166 gtttcataagtttttatactactagataaactcaaataaatcaatcgaaagaggatctatatatatgtaagttacacatctcggtaggggatataagttt 24258265  T
Q  406 cgcttaacatggttgatctgagagagttaaaaagtaaagtgataaagatgtcaatactaaatatcaacattt 477  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24258266 cgcttagcatggttgatctgagagagttaaaaagtaaagtgataaagatgtcaatactaaatatcaacattt 24258337  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 9700041 - 9700139
Alignment:
Q  246 aataaggttaaaataacctatgtacatgtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataa 344  Q
    |||||||| |||| | | |||| ||||||||||||||| ||||||| |||||   ||||||| ||| |||||||||| ||| ||||||| |||||||||    
T  9700041 aataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataa 9700139  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 49845543 - 49845456
Alignment:
Q  273 gtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataaatcaatcgaaagagga 360  Q
    ||||||| |||||| || | ||||| | |||||||||||||||| ||||||||| || |||| ||||||||| |||||| ||| ||||    
T  49845543 gtcataagttgtttccataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaacagga 49845456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 10540500 - 10540418
Alignment:
Q  269 acatgtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataaatcaatc 351  Q
    |||||||||||||||||| || | ||||| ||||| ||| | ||||||| ||||   | |||||||||||||||||| |||||    
T  10540500 acatgtcataaattgtttccataagctctcctaaagagtctgataagtgcttatgtgaatagataaactcaaataaagcaatc 10540418  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 8328126 - 8328045
Alignment:
Q  269 acatgtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataaatcaat 350  Q
    ||||||||||||||||||||| | ||| ||| ||| ||| ||||||||| |||| | | ||||||| |||||||| ||||||    
T  8328126 acatgtcataaattgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaatacatcaat 8328045  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 36751928 - 36751841
Alignment:
Q  264 tatgtacatgtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataaatcaatc 351  Q
    |||| ||||||||||||||||||||||| ||||||  ||| ||| ||| |||||  || || | | |||||||||||||||| |||||    
T  36751928 tatggacatgtcataaattgttttcacaagctcttacaaacagtatcacaagtgcatacacaagtggataaactcaaataaaccaatc 36751841  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 41052771 - 41052806
Alignment:
Q  81 tgtttggataaacaatttaattaagcgcttgtagca 116  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41052771 tgtttggataaacaatttaattaagtgcttgtagca 41052806  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 2103168 - 2103208
Alignment:
Q  271 atgtcataaattgttttcacacgctcttctaaatagtttca 311  Q
    ||||||||| ||||||||| ||||||||||||| |||||||    
T  2103168 atgtcataagttgttttcatacgctcttctaaacagtttca 2103208  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 13244551 - 13244483
Alignment:
Q  276 ataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataa 344  Q
    |||| ||||||||| | ||||||| ||| ||| ||||||||||||||   | |||||||||||||||||    
T  13244551 ataagttgttttcataagctcttccaaacagtgtcataagtgtttatttcaatagataaactcaaataa 13244483  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 33498659 - 33498764
Alignment:
Q  246 aataaggttaaaataacctatgtacatgtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataaa 345  Q
    |||||| | ||||||||||||  ||||||||||| ||||||||| | ||||| | ||| ||| ||| |||||||| |||   | ||||| |||||||||     
T  33498659 aataagctgaaaataacctatagacatgtcataagttgttttcataagctctaccaaaaagtctcagaagtgtttttaccggttgataacctcaaataag 33498758  T
Q  346 tcaatc 351  Q
    ||||||    
T  33498759 tcaatc 33498764  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 8786 - 8754
Alignment:
Q  319 ttatactactagataaactcaaataaatcaatc 351  Q
    |||||||| ||||||||||||||||||||||||    
T  8786 ttatactaatagataaactcaaataaatcaatc 8754  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 24417740 - 24417660
Alignment:
Q  271 atgtcataaattgttttcacacgctcttctaaatagtttcataagtgtttatactactagataaactcaaataaatcaatc 351  Q
    ||||||||| ||||||| ||||  ||||  ||||||| ||| ||||  ||||| || ||||||||||||||||| ||||||    
T  24417740 atgtcataagttgtttttacacattctttcaaatagtctcacaagtacttatattaatagataaactcaaataagtcaatc 24417660  T

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